Structure of PDB 5cnm Chain A Binding Site BS01

Receptor Information
>5cnm Chain A (length=434) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RREIKIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEI
NKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLIPLLIAGVIGGS
YSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAK
AMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGI
RKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASRANASFTWVASDG
WGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFR
DFWEQKFQCSLQNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALH
KMQRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVK
FDTFGDGMGRYNVFNFQSYLKVGHWAETLSLDVN
Ligand information
Ligand ID52Q
InChIInChI=1S/C10H12N4O4S/c11-10(8(17)18)1-3(19-9-12-2-13-14-9)4-5(6(4)10)7(15)16/h2-6H,1,11H2,(H,15,16)(H,17,18)(H,12,13,14)/t3-,4+,5+,6+,10+/m1/s1
InChIKeyYSOWRGMLMZQSBX-AVUIYAGVSA-N
SMILES
SoftwareSMILES
CACTVS 3.385N[C@]1(C[C@@H](Sc2n[nH]cn2)[C@H]3[C@@H]([C@@H]13)C(O)=O)C(O)=O
ACDLabs 12.01C12C(C1C(CC2Sc3nncn3)(C(O)=O)N)C(O)=O
OpenEye OEToolkits 1.9.2c1[nH]nc(n1)S[C@@H]2C[C@]([C@H]3[C@@H]2[C@@H]3C(=O)O)(C(=O)O)N
OpenEye OEToolkits 1.9.2c1[nH]nc(n1)SC2CC(C3C2C3C(=O)O)(C(=O)O)N
CACTVS 3.385N[C]1(C[CH](Sc2n[nH]cn2)[CH]3[CH]([CH]13)C(O)=O)C(O)=O
FormulaC10 H12 N4 O4 S
Name(1R,2S,4R,5R,6R)-2-amino-4-(1H-1,2,4-triazol-3-ylsulfanyl)bicyclo[3.1.0]hexane-2,6-dicarboxylic acid
ChEMBLCHEMBL3616847
DrugBank
ZINCZINC000117707409
PDB chain5cnm Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5cnm Synthesis and Pharmacological Characterization of C4-(Thiotriazolyl)-substituted-2-aminobicyclo[3.1.0]hexane-2,6-dicarboxylates. Identification of (1R,2S,4R,5R,6R)-2-Amino-4-(1H-1,2,4-triazol-3-ylsulfanyl)bicyclo[3.1.0]hexane-2,6-dicarboxylic Acid (LY2812223), a Highly Potent, Functionally Selective mGlu2 Receptor Agonist.
Resolution2.84 Å
Binding residue
(original residue number in PDB)
R64 R68 Y150 S151 A172 S173 T174 K389
Binding residue
(residue number reindexed from 1)
R35 R39 Y101 S102 A123 S124 T125 K334
Annotation score1
Binding affinityPDBbind-CN: -logKd/Ki=6.81,Ki=156nM
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004930 G protein-coupled receptor activity
Biological Process
GO:0007186 G protein-coupled receptor signaling pathway
Cellular Component
GO:0016020 membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:5cnm, PDBe:5cnm, PDBj:5cnm
PDBsum5cnm
PubMed26313429
UniProtQ14832|GRM3_HUMAN Metabotropic glutamate receptor 3 (Gene Name=GRM3)

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