Structure of PDB 5clj Chain A Binding Site BS01

Receptor Information
>5clj Chain A (length=160) Species: 1457393 (Acetobacter aceti 1023) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSANRTPDRLADYA
RTAAERGLNVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLL
SIVQMPGGVPVGTLAIGASGAKNAALLAASILALYNPALAARLETWRALQ
TASVPNSPIT
Ligand information
Ligand IDAIR
InChIInChI=1S/C8H14N3O7P/c9-5-1-10-3-11(5)8-7(13)6(12)4(18-8)2-17-19(14,15)16/h1,3-4,6-8,12-13H,2,9H2,(H2,14,15,16)/t4-,6-,7-,8-/m1/s1
InChIKeyPDACUKOKVHBVHJ-XVFCMESISA-N
SMILES
SoftwareSMILES
CACTVS 3.341Nc1cncn1[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0c1c(n(cn1)C2C(C(C(O2)COP(=O)(O)O)O)O)N
OpenEye OEToolkits 1.5.0c1c(n(cn1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N
ACDLabs 10.04O=P(O)(O)OCC2OC(n1cncc1N)C(O)C2O
CACTVS 3.341Nc1cncn1[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O
FormulaC8 H14 N3 O7 P
Name5-AMINOIMIDAZOLE RIBONUCLEOTIDE
ChEMBLCHEMBL1230914
DrugBank
ZINC
PDB chain5clj Chain A Residue 200 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5clj Biochemical and structural studies of N5-carboxyaminoimidazole ribonucleotide mutase from the acidophilic bacterium Acetobacter aceti.
Resolution1.85 Å
Binding residue
(original residue number in PDB)		G29 S30 S32 D33 S57 R60 A84 G85
Binding residue
(residue number reindexed from 1)		G10 S11 S13 D14 S38 R41 A65 G66
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Nov 17 00:03:09 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5clj', asym_id = 'A', bs = 'BS01', title = 'Biochemical and structural studies of N5-carboxy...rom the acidophilic bacterium Acetobacter aceti. '
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5clj', asym_id='A', bs='BS01', title='Biochemical and structural studies of N5-carboxy...rom the acidophilic bacterium Acetobacter aceti. ')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0006189', uniprot = '', pdbid = '5clj', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0006189', uniprot='', pdbid='5clj', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>