Structure of PDB 5cfd Chain A Binding Site BS01

Receptor Information
>5cfd Chain A (length=252) Species: 434309 (Saffold virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GVDNAEKGKVSDDNASTDFVAEPVKLPENQTRVSFFYDRSTLSSVLQSTS
DVSSKFTPSTAKNLQNSILLTPLPSDIVNNSVLPEQERWISFASPTTQKP
PYKTKQDWNFIMFSPFTYYKCDLEVTLSKNDRETISSVVRYVPCGAPSDL
SDQTMPQTPSLADTRDPHMWVVGQGTTNQISFVIPYTSPLSVLPSVWFNG
FSNFDNSSRFGVAPNADFGRLLLQGQGTFSVHYRYKKMRVFCPRPTVFIP
WP
Ligand information
>5cfd Chain D (length=24) Species: 434309 (Saffold virus) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
GNEGVIINNYYSNQYQNSIDLSAN
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5cfd Structure and Genome Release Mechanism of the Human Cardiovirus Saffold Virus 3.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		F35 D38 D122 K238 K239
Binding residue
(residue number reindexed from 1)		F35 D38 D122 K236 K237
Enzymatic activity
Enzyme Commision number 2.7.7.48: RNA-directed RNA polymerase.
3.4.22.28: picornain 3C.
3.6.4.13: RNA helicase.
External links
PDB RCSB:5cfd, PDBe:5cfd, PDBj:5cfd
PDBsum5cfd
PubMed27279624
UniProtC0MHL9|POLG_SAFV Genome polyprotein

[Back to BioLiP]