Structure of PDB 5cet Chain A Binding Site BS01

Receptor Information

>5cet Chain A (length=328) Species: 83332 (Mycobacterium tuberculosis H37Rv) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

RRAGARVDAVGAAALLSAAARVGVVCHVHPDADTIGAGLALALVLDGCGK
RVEVSFAAPATLPESLRSLPGCHLLVRPEVMRRDVDLVVTVDIPSVDRLG
ALGDLTDSGRELLVIDHHASNDLFGTANFIDPSADSTTTMVAEILDAWGK
PIDPRVAHCIYAGLATDTGSFRWASVRGYRLAARLVEIGVDNATVSRTLM
DSHPFTWLPLLSRVLGSAQLVSEAVGGRGLVYVVVDNREWVAARSEEVES
IVDIVRTTQQAEVAAVFKEVEPHRWSVSMRAKTVNLAAVASGFGGGGHRL
AAGYTTTGSIDDAVASLRAALGLTRAPP

Ligand information

Ligand ID

InChI

InChI=1S/Mn/q+2

InChIKey

WAEMQWOKJMHJLA-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mn+2]
CACTVS 3.341	[Mn++]

Formula

Name

MANGANESE (II) ION

PDB chain

5cet Chain A Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5cet Structural and Biochemical Insight into the Mechanism of Rv2837c from Mycobacterium tuberculosis as a c-di-NMP Phosphodiesterase
Resolution	2.0 Å
Binding residue (original residue number in PDB)	D47 D106 H131 D181
Binding residue (residue number reindexed from 1)	D33 D92 H117 D167
Annotation score	1

Enzymatic activity

Enzyme Commision number

3.1.-.-
3.1.3.7: 3'(2'),5'-bisphosphate nucleotidase.

Gene Ontology

	Molecular Function
GO:0003676	nucleic acid binding
GO:0004527	exonuclease activity
GO:0008441	3'(2'),5'-bisphosphate nucleotidase activity

View graph for
Molecular Function

External links

PDB	RCSB:5cet, PDBe:5cet, PDBj:5cet
PDBsum	5cet
PubMed	26668313
UniProt	P71615\|NRNA_MYCTU Bifunctional oligoribonuclease and PAP phosphatase NrnA (Gene Name=nrnA)

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