Structure of PDB 5c2f Chain A Binding Site BS01

Receptor Information

>5c2f Chain A (length=230) Species: 10761 (Lederbergvirus Sf6) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MAIIKREWLEAATDAHKKLGWKAKGAVVSAHDPSDTGPDAKGYASRHGSV
VKRIAEGLLMDINEGADWATSLAIEDGADHYLWDGDGVGAGLRRQTTEAF
SGKKITATMFKGSESPFDEDAPYQAVRTIGDVFRNKRAQFYYALADRLYL
TYRAVVHGEYADPDDMLSFDKEAIGEKMLEKLFAELTQIQRKFNNNGKLE
LMTAVEMKQKLGIPSPNLADALMMCMHCPA

Ligand information

Ligand ID

InChI

InChI=1S/Mn/q+2

InChIKey

WAEMQWOKJMHJLA-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mn+2]
CACTVS 3.341	[Mn++]

Formula

Name

MANGANESE (II) ION

PDB chain

5c2f Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5c2f Two distinct modes of metal ion binding in the nuclease active site of a viral DNA-packaging terminase: insight into the two-metal-ion catalytic mechanism.
Resolution	1.86 Å
Binding residue (original residue number in PDB)	D244 D296
Binding residue (residue number reindexed from 1)	D32 D84
Annotation score	4

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:5c2f, PDBe:5c2f, PDBj:5c2f
PDBsum	5c2f
PubMed	26450964
UniProt	Q716H3

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