Structure of PDB 5bwa Chain A Binding Site BS01

Receptor Information
>5bwa Chain A (length=350) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TAKDILDQKINDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAI
VKTLAATGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANN
GVQMMTFDSEVELMKVARAHPKAKLVLRIATDRLSVKFGATLRTSRLLLE
RAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLL
DIGGGFPGSEDKFEEITGVINPALDKYFPSRIIAEPGRYYVASAFTLAVN
IIAKKIVLKEQTSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQSSSIWG
PTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVATFNGFQRPTIYYVMS
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain5bwa Chain A Residue 600 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5bwa Structural basis of Ornithine Decarboxylase inactivation and accelerated degradation by polyamine sensor Antizyme1
Resolution3.2 Å
Binding residue
(original residue number in PDB)		A67 K69 D88 H197 G237 E274 G276 R277 Y389
Binding residue
(residue number reindexed from 1)		A41 K43 D62 H165 G205 E235 G237 R238 Y332
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) K69 H197 E274
Catalytic site (residue number reindexed from 1) K43 H165 E235
Enzyme Commision number 4.1.1.17: ornithine decarboxylase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004586 ornithine decarboxylase activity
GO:0005515 protein binding
GO:0016831 carboxy-lyase activity
GO:0042803 protein homodimerization activity
Biological Process
GO:0001822 kidney development
GO:0006595 polyamine metabolic process
GO:0006596 polyamine biosynthetic process
GO:0008283 cell population proliferation
GO:0008284 positive regulation of cell population proliferation
GO:0009615 response to virus
GO:0033387 putrescine biosynthetic process from ornithine
GO:0042176 regulation of protein catabolic process
Cellular Component
GO:0005575 cellular_component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5bwa, PDBe:5bwa, PDBj:5bwa
PDBsum5bwa
PubMed26443277
UniProtP11926|DCOR_HUMAN Ornithine decarboxylase (Gene Name=ODC1)

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