Structure of PDB 5bpu Chain A Binding Site BS01
Receptor Information
>5bpu Chain A (length=111) Species:
9606
(Homo sapiens) [
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IMDSDPRRCMRHHYVDSISHPLYKCSSKMVLLARCEGHCSQASRSEPLVS
FSTVLKQPFRSSCHCCRPQTSKLKALRLRCSGGMRLTATYRYILSCHCEE
CNSGTETSQVA
Ligand information
>5bpu Chain H (length=7) Species:
32630
(synthetic construct) [
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EEEEEEE
Receptor-Ligand Complex Structure
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PDB
5bpu
Structure and functional properties of Norrin mimic Wnt for signalling with Frizzled4, Lrp5/6, and proteoglycan.
Resolution
2.4 Å
Binding residue
(original residue number in PDB)
R38 C39 M40 R41 Y122 L124 C128
Binding residue
(residue number reindexed from 1)
R8 C9 M10 R11 Y92 L94 C98
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0005109
frizzled binding
GO:0005125
cytokine activity
GO:0005515
protein binding
GO:0042803
protein homodimerization activity
Biological Process
GO:0000278
mitotic cell cycle
GO:0000320
re-entry into mitotic cell cycle
GO:0001508
action potential
GO:0001525
angiogenesis
GO:0001666
response to hypoxia
GO:0001890
placenta development
GO:0001974
blood vessel remodeling
GO:0002088
lens development in camera-type eye
GO:0003406
retinal pigment epithelium development
GO:0003407
neural retina development
GO:0006099
tricarboxylic acid cycle
GO:0006366
transcription by RNA polymerase II
GO:0006544
glycine metabolic process
GO:0006622
protein targeting to lysosome
GO:0006749
glutathione metabolic process
GO:0006954
inflammatory response
GO:0007033
vacuole organization
GO:0007179
transforming growth factor beta receptor signaling pathway
GO:0007224
smoothened signaling pathway
GO:0007399
nervous system development
GO:0007601
visual perception
GO:0008104
protein localization
GO:0008283
cell population proliferation
GO:0009069
serine family amino acid metabolic process
GO:0010467
gene expression
GO:0010842
retina layer formation
GO:0014004
microglia differentiation
GO:0016055
Wnt signaling pathway
GO:0016358
dendrite development
GO:0016567
protein ubiquitination
GO:0021554
optic nerve development
GO:0030182
neuron differentiation
GO:0031290
retinal ganglion cell axon guidance
GO:0035426
extracellular matrix-cell signaling
GO:0035640
exploration behavior
GO:0045446
endothelial cell differentiation
GO:0045893
positive regulation of DNA-templated transcription
GO:0046697
decidualization
GO:0048678
response to axon injury
GO:0051091
positive regulation of DNA-binding transcription factor activity
GO:0051402
neuron apoptotic process
GO:0051897
positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction
GO:0060041
retina development in camera-type eye
GO:0060042
retina morphogenesis in camera-type eye
GO:0060070
canonical Wnt signaling pathway
GO:0060221
retinal rod cell differentiation
GO:0060856
establishment of blood-brain barrier
GO:0060996
dendritic spine development
GO:0061298
retina vasculature development in camera-type eye
GO:0061299
retina vasculature morphogenesis in camera-type eye
GO:0061304
retinal blood vessel morphogenesis
GO:0061518
microglial cell proliferation
GO:0070086
ubiquitin-dependent endocytosis
GO:0071456
cellular response to hypoxia
GO:0097601
retina blood vessel maintenance
GO:0110135
Norrin signaling pathway
GO:1904390
cone retinal bipolar cell differentiation
GO:1990963
establishment of blood-retinal barrier
Cellular Component
GO:0005576
extracellular region
GO:0005615
extracellular space
GO:0009986
cell surface
GO:0062023
collagen-containing extracellular matrix
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:5bpu
,
PDBe:5bpu
,
PDBj:5bpu
PDBsum
5bpu
PubMed
26158506
UniProt
Q00604
|NDP_HUMAN Norrin (Gene Name=NDP)
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