Structure of PDB 5b0s Chain A Binding Site BS01

Receptor Information
>5b0s Chain A (length=354) Species: 272626 (Listeria innocua Clip11262) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNIYRYEENPLITPLDVKPIHEGFEVIGAFNGGVAEYNGEVLLLLRVAEK
PVSEDPEIVLAPVYNAKNKELELQSFRLDDENYDFEDPRMIRSKAKLEGF
SYLTSLSYIRIARSKDGHHFTLDEKPFLYPFNEYQTFGIEDARVTQIGDT
YHVNFSAVSEFGVADALVTTKDFENLEYQGNIFAPENKDVLIFPEKINGK
YYALHRPSLKSIGNLDIWIASSPDLRSFGDHRHLLGIRPGEYDSGRVGGG
CVPIKTEEGWLILYHGATEENRYVMGAALLDLNDPTIVLKRTKTPILEPV
ADYEKNGFFGDVVFACGAIQEGDTLHMYYGVADTSMAGCDMKISEILHQL
EVEA
Ligand information
Ligand IDMAN
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-PQMKYFCFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-mannopyranose;
alpha-D-mannose;
D-mannose;
mannose
ChEMBLCHEMBL365590
DrugBank
ZINCZINC000003860903
PDB chain5b0s Chain C Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5b0s Characterization and crystal structure determination of beta-1,2-mannobiose phosphorylase from Listeria innocua
Resolution2.1 Å
Binding residue
(original residue number in PDB)		R89 K188 R246 N271 Y273
Binding residue
(residue number reindexed from 1)		R89 K188 R246 N271 Y273
Annotation score5
Enzymatic activity
Enzyme Commision number 2.4.1.339: beta-1,2-mannobiose phosphorylase.
Gene Ontology
Molecular Function
GO:0016757 glycosyltransferase activity

View graph for
Molecular Function
External links
PDB RCSB:5b0s, PDBe:5b0s, PDBj:5b0s
PDBsum5b0s
PubMed26632508
UniProtQ92DF6|BMBP_LISIN Beta-1,2-mannobiose phosphorylase (Gene Name=lin0857)

[Back to BioLiP]