Structure of PDB 5azf Chain A Binding Site BS01
Receptor Information
>5azf Chain A (length=119) Species:
6239
(Caenorhabditis elegans) [
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GPHMKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKK
KYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQD
HHEEDLFLYIAYSDESVYG
Ligand information
>5azf Chain C (length=4) Species:
4932
(Saccharomyces cerevisiae) [
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WEEL
Receptor-Ligand Complex Structure
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PDB
5azf
Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy.
Resolution
1.6 Å
Binding residue
(original residue number in PDB)
I21 R28 P30 K46 K48 Y49 L50 V51 P52 F60 L63 R67 F104
Binding residue
(residue number reindexed from 1)
I24 R31 P33 K49 K51 Y52 L53 V54 P55 F63 L66 R70 F107
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0005515
protein binding
GO:0008429
phosphatidylethanolamine binding
GO:0031625
ubiquitin protein ligase binding
GO:0050811
GABA receptor binding
Biological Process
GO:0000045
autophagosome assembly
GO:0000422
autophagy of mitochondrion
GO:0001778
plasma membrane repair
GO:0006914
autophagy
GO:0006995
cellular response to nitrogen starvation
GO:0008340
determination of adult lifespan
GO:0009408
response to heat
GO:0012501
programmed cell death
GO:0016236
macroautophagy
GO:0040024
dauer larval development
GO:0050830
defense response to Gram-positive bacterium
GO:0070266
necroptotic process
GO:0097237
cellular response to toxic substance
GO:0097352
autophagosome maturation
GO:0098792
xenophagy
GO:2000786
positive regulation of autophagosome assembly
Cellular Component
GO:0000407
phagophore assembly site
GO:0000421
autophagosome membrane
GO:0005634
nucleus
GO:0005737
cytoplasm
GO:0005739
mitochondrion
GO:0005741
mitochondrial outer membrane
GO:0005764
lysosome
GO:0005776
autophagosome
GO:0005886
plasma membrane
GO:0030425
dendrite
GO:0030670
phagocytic vesicle membrane
GO:0031410
cytoplasmic vesicle
GO:0042995
cell projection
GO:0043005
neuron projection
GO:0043025
neuronal cell body
GO:0043202
lysosomal lumen
GO:0043204
perikaryon
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:5azf
,
PDBe:5azf
,
PDBj:5azf
PDBsum
5azf
PubMed
26687600
UniProt
Q09490
|LGG1_CAEEL Protein lgg-1 (Gene Name=lgg-1)
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