Structure of PDB 4zjp Chain A Binding Site BS01

Receptor Information

>4zjp Chain A (length=270) Species: 339671 (Actinobacillus succinogenes 130Z)

MQETIALTVSTLDNPFFVSLKDGAQKKATELGYKLVVLDSQNDPSKELSN
VEDLTVRGAKVLLINPTDSAAVSNAVAIANRNKIPVITLDRGAAKGEVVS
HIASDNVAGGKMAGDFIAQKLGDGAKVIQLEGLAGTSAARERGEGFKQAI
EAHKFDVLASQPADFDRTKGLNVTENLLASKGSVQAIFAQNDEMALGALR
AISAAGKKVLVVGFDGTEDGVKAVKSGKLAATVAQQPELIGSLGVETADK
ILKGEKVDAKIPVALKVVTE

Ligand information

• Ligand ID: RIP
• InChI: InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4-,5-/m1/s1
• InChIKey: SRBFZHDQGSBBOR-TXICZTDVSA-N
• SMILES:
  OpenEye OEToolkits 1.5.0: C1C(C(C(C(O1)O)O)O)O
  OpenEye OEToolkits 1.5.0: C1[C@H]([C@H]([C@H]([C@@H](O1)O)O)O)O
  CACTVS 3.341: O[CH]1CO[CH](O)[CH](O)[CH]1O
  CACTVS 3.341: O[C@@H]1CO[C@@H](O)[C@H](O)[C@@H]1O
  ACDLabs 10.04: OC1C(O)COC(O)C1O
• Formula: C5 H10 O5
• Name: beta-D-ribopyranose;
  beta-D-ribose;
  D-ribose;
  ribose;
  RIBOSE(PYRANOSE FORM)
• ChEMBL: CHEMBL1159662
• DrugBank: DB04286
• ZINC: ZINC000004097544
• PDB chain: 4zjp Chain A Residue 301

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4zjp Structure of an ABC-Transporter Solute Binding Protein (SBP_IPR025997) from Actinobacillus Succinogenes (Asuc_0197, TARGET EFI-511067) with bound beta-D-ribopyranose
• Resolution: 1.63 Å
• Binding residue (original residue number in PDB): N36 F38 F39 D112 R113 R164 F187 N213 D237 Q257
• Binding residue (residue number reindexed from 1): N14 F16 F17 D90 R91 R142 F165 N191 D215 Q235
• Annotation score: 4

Enzymatic activity

• Enzyme Commision number: 3.6.3.17: Transferred entry: 7.5.2.8.

Gene Ontology

Molecular Function

• GO:0016787 hydrolase activity
• GO:0030246 carbohydrate binding

Cellular Component

• GO:0030288 outer membrane-bounded periplasmic space

External links

• PDB: RCSB:4zjp, PDBe:4zjp, PDBj:4zjp
• PDBsum: 4zjp
• UniProt: A6VKT0