Structure of PDB 4zc9 Chain A Binding Site BS01

Receptor Information
>4zc9 Chain A (length=127) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVK
LNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNK
PGDDIVLMAEALEKLFLQKINELPTEE
Ligand information
Ligand ID4MW
InChIInChI=1S/C38H37ClN8O7S/c1-19-20(2)55-38-31(19)33(22-9-11-23(39)12-10-22)42-25(34-45-44-21(3)46(34)38)17-29(49)40-15-4-5-16-41-30(50)18-54-27-8-6-7-24-32(27)37(53)47(36(24)52)26-13-14-28(48)43-35(26)51/h6-12,25-26H,4-5,13-18H2,1-3H3,(H,40,49)(H,41,50)(H,43,48,51)/t25-,26-/m0/s1
InChIKeyLKEGXJXRNBALBV-UIOOFZCWSA-N
SMILES
SoftwareSMILES
CACTVS 3.385Cc1sc2n3c(C)nnc3[CH](CC(=O)NCCCCNC(=O)COc4cccc5C(=O)N([CH]6CCC(=O)NC6=O)C(=O)c45)N=C(c7ccc(Cl)cc7)c2c1C
OpenEye OEToolkits 1.9.2Cc1c(sc-2c1C(=NC(c3n2c(nn3)C)CC(=O)NCCCCNC(=O)COc4cccc5c4C(=O)N(C5=O)C6CCC(=O)NC6=O)c7ccc(cc7)Cl)C
OpenEye OEToolkits 1.9.2Cc1c(sc-2c1C(=N[C@H](c3n2c(nn3)C)CC(=O)NCCCCNC(=O)COc4cccc5c4C(=O)N(C5=O)[C@H]6CCC(=O)NC6=O)c7ccc(cc7)Cl)C
CACTVS 3.385Cc1sc2n3c(C)nnc3[C@H](CC(=O)NCCCCNC(=O)COc4cccc5C(=O)N([C@H]6CCC(=O)NC6=O)C(=O)c45)N=C(c7ccc(Cl)cc7)c2c1C
ACDLabs 12.01O=C(NCCCCNC(COc1cccc3c1C(N(C2C(NC(CC2)=O)=O)C3=O)=O)=O)CC4N=C(c6c(n5c4nnc5C)sc(c6C)C)c7ccc(cc7)Cl
FormulaC38 H37 Cl N8 O7 S
Name2-[(6S)-4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]-N-(4-{[({2-[(3S)-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}oxy)acetyl]amino}butyl)acetamide;
DB-2-190
ChEMBL
DrugBank
ZINCZINC000230524815
PDB chain4zc9 Chain A Residue 4000 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4zc9 DRUG DEVELOPMENT. Phthalimide conjugation as a strategy for in vivo target protein degradation.
Resolution0.99 Å
Binding residue
(original residue number in PDB)
W81 P82 L92 L94 N140 I146 M149
Binding residue
(residue number reindexed from 1)
W40 P41 L51 L53 N99 I105 M108
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:4zc9, PDBe:4zc9, PDBj:4zc9
PDBsum4zc9
PubMed25999370
UniProtO60885|BRD4_HUMAN Bromodomain-containing protein 4 (Gene Name=BRD4)

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