Structure of PDB 4yox Chain A Binding Site BS01
Receptor Information
>4yox Chain A (length=226) Species:
53953
(Pyrococcus horikoshii) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
MRIVAADTGGAVLDESFQPVGLIATVAVLVEKPYKTSKRFLVKYADPYNY
DLSGRQAIRDEIELAIELAREVSPDVIHLNSTLGGIEVRKLDESTIDALQ
ISDRGKEIWKELSKDLQPLAKKFWEETGIEIIAIGKSSVPVRIAEIYAGI
FSVKWALDNVGGLLVGLPRYMEVEIKKDKIIGKSLDPREGGLYGEVKTEV
PQGIKWELYPNPLVRRFMVFEITSKS
Ligand information
>4yox Chain B (length=4) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
tttt
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
4yox
Structural basis for substrate recognition and processive cleavage mechanisms of the trimeric exonuclease PhoExo I
Resolution
2.05 Å
Binding residue
(original residue number in PDB)
D7 T8 G9 A11 R55 N80 T82 S102 G105 I108 G169 L170 P171 V217 F220
Binding residue
(residue number reindexed from 1)
D7 T8 G9 A11 R55 N80 T82 S102 G105 I108 G166 L167 P168 V214 F217
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0004527
exonuclease activity
GO:0046872
metal ion binding
View graph for
Molecular Function
External links
PDB
RCSB:4yox
,
PDBe:4yox
,
PDBj:4yox
PDBsum
4yox
PubMed
26138487
UniProt
A0A060P168
[
Back to BioLiP
]