Structure of PDB 4wer Chain A Binding Site BS01

Receptor Information

>4wer Chain A (length=285) Species: 226185 (Enterococcus faecalis V583)

AMKKAVLIVNPSSGGEKAKEFETLAEEKLKQLFDEVVVKQTEKGGDAEQF
AREAAESHFDSVFVMGGDGTVNEGISGLAEQAYRPKFGFFPLGTVNDLAR
ALNLPMDPEEAIQQLDLEKTSALDVGKINDDYFMNVVAIGTIKLGKLAYF
ISGAKHLANAQTYPFHLSLDQKEQTIESSTVLVGLTNSIGGFETLLPEAQ
VDDGKLHLVYLKDQSLWDAVKAVPDLLKGVDQSTDNLVYLTFKEGTISLE
NQEELTTNVDGDEGAALPITLKILPKHLTVYCGEE

Ligand information

• Ligand ID: AMP
• InChI: InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
• InChIKey: UDMBCSSLTHHNCD-KQYNXXCUSA-N
• SMILES:
  CACTVS 3.370: Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O
  CACTVS 3.370: Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O
  OpenEye OEToolkits 1.7.6: c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N
  ACDLabs 12.01: O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
  OpenEye OEToolkits 1.7.6: c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)N
• Formula: C10 H14 N5 O7 P
• Name: ADENOSINE MONOPHOSPHATE
• ChEMBL: CHEMBL752
• DrugBank: DB00131
• ZINC: ZINC000003860156
• PDB chain: 4wer Chain A Residue 401

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4wer Crystal structure of diacylglycerol kinase catalytic domain protein from Enterococcus faecalis V583
• Resolution: 2.05 Å
• Binding residue (original residue number in PDB): N9 S11 S12 T40 E41 G43 G66 G68 T69
• Binding residue (residue number reindexed from 1): N10 S12 S13 T41 E42 G44 G67 G69 T70
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0004143 ATP-dependent diacylglycerol kinase activity
• GO:0005524 ATP binding
• GO:0016301 kinase activity

Biological Process

• GO:0008654 phospholipid biosynthetic process
• GO:0016310 phosphorylation

Cellular Component

• GO:0005886 plasma membrane

External links

• PDB: RCSB:4wer, PDBe:4wer, PDBj:4wer
• PDBsum: 4wer
• UniProt: Q830X4