Structure of PDB 4w58 Chain A Binding Site BS01

Receptor Information
>4w58 Chain A (length=165) Species: 10665 (Tequatrovirus T4) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAI
GRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCAAI
NMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVI
TTFRTGTWDAYKNLL
Ligand information
Ligand ID3H2
InChIInChI=1S/C11H16/c1-2-3-5-8-11-9-6-4-7-10-11/h4,6-7,9-10H,2-3,5,8H2,1H3
InChIKeyPWATWSYOIIXYMA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01c1ccccc1CCCCC
CACTVS 3.385
OpenEye OEToolkits 1.9.2		CCCCCc1ccccc1
FormulaC11 H16
Namepentylbenzene
ChEMBL
DrugBank
ZINCZINC000001699444
PDB chain4w58 Chain A Residue 200 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4w58 Homologous ligands accommodated by discrete conformations of a buried cavity.
Resolution1.8 Å
Binding residue
(original residue number in PDB)		A99 V111 L118
Binding residue
(residue number reindexed from 1)		A99 V111 L118
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) E11 D20
Catalytic site (residue number reindexed from 1) E11 D20
Enzyme Commision number 3.2.1.17: lysozyme.
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
Biological Process
GO:0009253 peptidoglycan catabolic process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0044659 viral release from host cell by cytolysis
Cellular Component
GO:0030430 host cell cytoplasm

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Cellular Component
External links
PDB RCSB:4w58, PDBe:4w58, PDBj:4w58
PDBsum4w58
PubMed25847998
UniProtP00720|ENLYS_BPT4 Endolysin (Gene Name=E)

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