Structure of PDB 4rzq Chain A Binding Site BS01

Receptor Information
>4rzq Chain A (length=422) Species: 71421 (Haemophilus influenzae Rd KW20) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HMLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRDLKHVLLADETI
CIGPAPSAKSYLNIPAIIAAAEVTGADAIHPGYGFLSENADFAEQVERSG
FTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVPGSDGPAKNKEIAKRIGY
PIIIKRVVRSEDALEESIAMTKAEYMEKYLENPRHVEIQVLADTHGNAVY
LAERDCSMQRRHQKVVEEAPAPGITEEVRRDIGSRCANACVEIGYRGAGT
FEFLYENGEFYFIEMNTRIQVEHPVTEMITGVDLVKEQLRIAAGLPISFK
QEDIKVKGHAMECRINAEDPKTFLPSPGKVNHLHSPGGLGVRWDSHVYGG
YTVPPHYDSMIAKLITYGDTREVAIRRMQNALSETIIDGIKTNIPLHELI
LEDENFQKGGTNIHYLEKKLGM
Ligand information
Ligand IDY7Y
InChIInChI=1S/C13H20N2O5S/c1-19-10(16)6-4-3-5-9-11-8(7-21-9)15(12(17)14-11)13(18)20-2/h8-9,11H,3-7H2,1-2H3,(H,14,17)/t8-,9-,11-/m0/s1
InChIKeyBNKOHWLXGAGMAQ-QXEWZRGKSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6COC(=O)CCCCC1C2C(CS1)N(C(=O)N2)C(=O)OC
OpenEye OEToolkits 1.7.6COC(=O)CCCC[C@H]1[C@@H]2[C@H](CS1)N(C(=O)N2)C(=O)OC
CACTVS 3.385COC(=O)CCCC[C@@H]1SC[C@H]2[C@@H]1NC(=O)N2C(=O)OC
ACDLabs 12.01O=C(OC)CCCCC1SCC2N(C(=O)OC)C(=O)NC12
CACTVS 3.385COC(=O)CCCC[CH]1SC[CH]2[CH]1NC(=O)N2C(=O)OC
FormulaC13 H20 N2 O5 S
Namemethyl (3aS,4S,6aR)-4-(5-methoxy-5-oxopentyl)-2-oxohexahydro-1H-thieno[3,4-d]imidazole-1-carboxylate
ChEMBL
DrugBank
ZINC
PDB chain4rzq Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4rzq Structural Analysis of Substrate, Reaction Intermediate, and Product Binding in Haemophilus influenzae Biotin Carboxylase.
Resolution1.98 Å
Binding residue
(original residue number in PDB)
N9 R10 Y82 F84 K238 R292 Q294 V295 E296 R338 D382
Binding residue
(residue number reindexed from 1)
N10 R11 Y83 F85 K214 R268 Q270 V271 E272 R314 D358
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) K116 K159 H209 R235 T274 E276 E288 N290 R292 E296 R338
Catalytic site (residue number reindexed from 1) K117 K155 H185 R211 T250 E252 E264 N266 R268 E272 R314
Enzyme Commision number 6.3.4.14: biotin carboxylase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0003989 acetyl-CoA carboxylase activity
GO:0004075 biotin carboxylase activity
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0006633 fatty acid biosynthetic process
GO:2001295 malonyl-CoA biosynthetic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:4rzq, PDBe:4rzq, PDBj:4rzq
PDBsum4rzq
PubMed26020841
UniProtP43873|ACCC_HAEIN Biotin carboxylase (Gene Name=accC)

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