Structure of PDB 4q7z Chain A Binding Site BS01

Receptor Information
>4q7z Chain A (length=233) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IIGGHEVTPHSRPYMASVRFGGQHHCGGFLLRARWVVSAAHCFSHRDLRT
GLVVLGAHVLSTAEPTQQVFGIDALTTHPDYHPMTHANDICLLRLNGSAV
LGPAVGLLRLPGRRARPPTAGTRCRVAGWGFVSDFEELPPGLMEAKVRVL
DPDVCNSSWKGHLTLTMLCTRSGDSHRRGFCSADSGGPLVCRNRAHGLVS
FSGLWCGDPKTPDVYTQVSAFVAWIWDVVRRSS
Ligand information
Ligand ID2YT
InChIInChI=1S/C25H35ClN6O3/c26-16-22(33)20(12-7-13-30-25(28)29)31-24(35)21(15-18-10-5-2-6-11-18)32-23(34)19(27)14-17-8-3-1-4-9-17/h1-6,8-11,19-22,33H,7,12-16,27H2,(H,31,35)(H,32,34)(H4,28,29,30)/t19-,20-,21-,22+/m0/s1
InChIKeyZKHBINZTIMXMQW-MYGLTJDJSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6c1ccc(cc1)CC(C(=O)NC(Cc2ccccc2)C(=O)NC(CCCNC(=N)N)C(CCl)O)N
OpenEye OEToolkits 1.7.6[H]/N=C(/N)\NCCC[C@@H]([C@@H](CCl)O)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](Cc2ccccc2)N
CACTVS 3.385N[CH](Cc1ccccc1)C(=O)N[CH](Cc2ccccc2)C(=O)N[CH](CCCNC(N)=N)[CH](O)CCl
ACDLabs 12.01ClCC(O)C(NC(=O)C(NC(=O)C(N)Cc1ccccc1)Cc2ccccc2)CCCNC(=[N@H])N
CACTVS 3.385N[C@@H](Cc1ccccc1)C(=O)N[C@@H](Cc2ccccc2)C(=O)N[C@@H](CCCNC(N)=N)[C@H](O)CCl
FormulaC25 H35 Cl N6 O3
NameL-phenylalanyl-N-[(2S,3S)-6-carbamimidamido-1-chloro-2-hydroxyhexan-3-yl]-L-phenylalaninamide;
PHE-PHE-ARG-chloromethylketone
ChEMBL
DrugBank
ZINCZINC000098208360
PDB chain4q7z Chain A Residue 304 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4q7z Structures of neutrophil serine protease 4 reveal an unusual mechanism of substrate recognition by a trypsin-fold protease.
Resolution1.4 Å
Binding residue
(original residue number in PDB)
H57 D102 F190 C191 S192 A193 S195 S214 F215 S216 C220
Binding residue
(residue number reindexed from 1)
H41 D89 F180 C181 S182 A183 S185 S200 F201 S202 C206
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) H57 D102 S192 A193 D194 S195 G196
Catalytic site (residue number reindexed from 1) H41 D89 S182 A183 D184 S185 G186
Enzyme Commision number 3.4.21.-
Gene Ontology
Molecular Function
GO:0004252 serine-type endopeptidase activity
GO:0008201 heparin binding
GO:0008236 serine-type peptidase activity
Biological Process
GO:0006508 proteolysis
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0035578 azurophil granule lumen

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:4q7z, PDBe:4q7z, PDBj:4q7z
PDBsum4q7z
PubMed25156428
UniProtQ6UWY2|PRS57_HUMAN Serine protease 57 (Gene Name=PRSS57)

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