Structure of PDB 4q5k Chain A Binding Site BS01

Receptor Information
>4q5k Chain A (length=237) Species: 411479 (Bacteroides uniformis ATCC 8492) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GKDMLSNGIKYLDVPYVAHTLEADGPEELVINCDEVDCTTLVEYVLAETL
TPKLADGDISESAFADNLQKIRYRDGKIDGYTSRLHYIADWINNGVRNGF
LQDVTGAMSPDTERLSISYMSSHPQLYKQLANSPENVAKMKKIEQSLSGK
EVHYLPKAKLPADGLPWIKDGDIIAITTNTPGLDVAHMGIAFYADNKLLL
VHASSTDKKVVVSKVPLSQMLKDNNKWTGIRVLRMKK
Ligand information
Ligand ID2YP
InChIInChI=1S/C19H30N2O12/c1-6(17(27)28)30-16-12(21-8(3)24)18-29-5-10(32-18)15(16)33-19-11(20-7(2)23)14(26)13(25)9(4-22)31-19/h6,9-16,18-19,22,25-26H,4-5H2,1-3H3,(H,20,23)(H,21,24)(H,27,28)/t6-,9-,10-,11-,12-,13-,14-,15-,16-,18-,19+/m1/s1
InChIKeyMWWQKONGFKUAEK-STFZFCBQSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(O)C(OC3C(OC1OC(CO)C(O)C(O)C1NC(=O)C)C2OC(OC2)C3NC(=O)C)C
CACTVS 3.385C[CH](O[CH]1[CH](NC(C)=O)[CH]2OC[CH](O2)[CH]1O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3NC(C)=O)C(O)=O
OpenEye OEToolkits 1.7.6CC(C(=O)O)OC1C(C2OCC(C1OC3C(C(C(C(O3)CO)O)O)NC(=O)C)O2)NC(=O)C
CACTVS 3.385C[C@@H](O[C@@H]1[C@@H](NC(C)=O)[C@@H]2OC[C@@H](O2)[C@H]1O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3NC(C)=O)C(O)=O
OpenEye OEToolkits 1.7.6C[C@H](C(=O)O)O[C@@H]1[C@H]([C@@H]2OC[C@H]([C@H]1O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)NC(=O)C)O2)NC(=O)C
FormulaC19 H30 N2 O12
Name(2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid
ChEMBL
DrugBank
ZINCZINC000098208357
PDB chain4q5k Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4q5k Structure-guided functional characterization of DUF1460 reveals a highly specific NlpC/P60 amidase family.
Resolution1.3 Å
Binding residue
(original residue number in PDB)
Y41 D62 C63 T64 R109 H111 Y144 Y152 L208 V210 A211
Binding residue
(residue number reindexed from 1)
Y16 D37 C38 T39 R84 H86 Y119 Y127 L183 V185 A186
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links