Structure of PDB 4pyl Chain A Binding Site BS01

Receptor Information

>4pyl Chain A (length=213) Species: 10116 (Rattus norvegicus)

TKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAV
IREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQML
NFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLL
LEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKV
VDGLEKAIYQGPS

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 4pyl Chain A Residue 301

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4pyl Mapping the conformational space accessible to catechol-O-methyltransferase.
• Resolution: 2.2 Å
• Binding residue (original residue number in PDB): D184 D212 N213
• Binding residue (residue number reindexed from 1): D138 D166 N167
• Annotation score: 1

Enzymatic activity

• Catalytic site (original residue number in PDB): D184 K187 D212 N213 E242
• Catalytic site (residue number reindexed from 1): D138 K141 D166 N167 E196
• Enzyme Commision number: 2.1.1.6: catechol O-methyltransferase.

Gene Ontology

Molecular Function

• GO:0000287 magnesium ion binding
• GO:0008171 O-methyltransferase activity
• GO:0016206 catechol O-methyltransferase activity

Biological Process

• GO:0006584 catecholamine metabolic process

External links

• PDB: RCSB:4pyl, PDBe:4pyl, PDBj:4pyl
• PDBsum: 4pyl
• PubMed: 25084335
• UniProt: P22734|COMT_RAT Catechol O-methyltransferase (Gene Name=Comt)