Structure of PDB 4pi9 Chain A Binding Site BS01

Receptor Information
>4pi9 Chain A (length=222) Species: 158878 (Staphylococcus aureus subsp. aureus Mu50) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AANDVNYSFDEAVSMQQGKGIVQTKEEDGKFVEANNNEIAKAMTISDMKY
MDITEKVPMSESEVNQLLKGKGILENRGKVFLEAQEKYEVNVIYLVSHAL
VETGNGKSELAKGIKDGKKRYYNFFGIGAFDSSAVRSGKSYAEKEQWTSP
DKAIIGGAKFIRNEYFENNQLNLYQMRWNPENPAQHQYASDIRWADKIAK
LMDKSYKQFGIKKDDIRQTYYK
Ligand information
Ligand ID3LT
InChIInChI=1S/C19H32N4O11/c1-7(17(30)23-10(16(20)29)4-5-12(26)27)21-18(31)8(2)33-15-13(22-9(3)25)19(32)34-11(6-24)14(15)28/h7-8,10-11,13-15,19,24,28,32H,4-6H2,1-3H3,(H2,20,29)(H,21,31)(H,22,25)(H,23,30)(H,26,27)/t7-,8+,10+,11+,13+,14+,15+,19+/m0/s1
InChIKeyBSOQXXWZTUDTEL-ZUYCGGNHSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.9.2C[C@@H](C(=O)N[C@H](CCC(=O)O)C(=O)N)NC(=O)[C@@H](C)O[C@@H]1[C@H]([C@@H](O[C@@H]([C@H]1O)CO)O)NC(=O)C
ACDLabs 12.01C1(OC(C(C(C1NC(=O)C)OC(C(NC(C)C(=O)NC(C(=O)N)CCC(=O)O)=O)C)O)CO)O
CACTVS 3.385C[C@H](NC(=O)[C@@H](C)O[C@H]1[C@H](O)[C@@H](CO)O[C@@H](O)[C@@H]1NC(C)=O)C(=O)N[C@H](CCC(O)=O)C(N)=O
OpenEye OEToolkits 1.9.2CC(C(=O)NC(CCC(=O)O)C(=O)N)NC(=O)C(C)OC1C(C(OC(C1O)CO)O)NC(=O)C
CACTVS 3.385C[CH](NC(=O)[CH](C)O[CH]1[CH](O)[CH](CO)O[CH](O)[CH]1NC(C)=O)C(=O)N[CH](CCC(O)=O)C(N)=O
FormulaC19 H32 N4 O11
Name(4R)-4-[[(2S)-2-[[(2R)-2-[(2R,3S,4R,5R,6R)-5-acetamido-2-(hydroxymethyl)-3,6-bis(oxidanyl)oxan-4-yl]oxypropanoyl]amino]propanoyl]amino]-5-azanyl-5-oxidanylidene-pentanoic acid
ChEMBLCHEMBL369794
DrugBank
ZINCZINC000025982261
PDB chain4pi9 Chain A Residue 311 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4pi9 The mechanism behind the selection of two different cleavage sites in NAG-NAM polymers.
Resolution1.48 Å
Binding residue
(original residue number in PDB)
G162 I163 G164 F196 Y201 Q223 Y224
Binding residue
(residue number reindexed from 1)
G126 I127 G128 F160 Y165 Q187 Y188
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004040 amidase activity

View graph for
Molecular Function
External links
PDB RCSB:4pi9, PDBe:4pi9, PDBj:4pi9
PDBsum4pi9
PubMed28250957
UniProtA0A0H3JT72

[Back to BioLiP]