Structure of PDB 4oi1 Chain A Binding Site BS01

Receptor Information
>4oi1 Chain A (length=395) Species: 6239 (Caenorhabditis elegans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ENVQEFVLKEDCELRFAAGDDSDVCLELVKGYAEIFGTELLLNKKYTFPA
KSRVAAFTWKGATIELVGTTESAYVAESTPMVIYLNIHAAMEEVRKKREE
QAKAKGPRLLLVGPTDVGKTTVSRILCNYSVRQGRTPIFVELDVGQNSVS
VPGTVAAVLVQKTADVIDGFERNQPIVFNFGHTSPSANLSLYEALFKEMA
TTLNAQIQENDEAKIGGMIINTCGWVDGEGYKCIVKAASAFEVDVVIVLD
HERLYSDLSKELPEFVRLTHVPKSGGVEQRTGQIRSKMRGENVHRYFYGT
RANNLYPFTFDVSFDDVTLCKIGKLVIMEPSADIKHHLFAFSRSTKADEN
VLKSPVFGFCLVTEVDLEKRTMSILCPQRTIPSKVLVFSDITHLD
Ligand information
Receptor-Ligand Complex Structure
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PDB4oi1 RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1.
Resolution2.3 Å
Binding residue
(original residue number in PDB)		D151 G153 T191 S192 S194 C231 G232 W233 R293 R297
Binding residue
(residue number reindexed from 1)		D143 G145 T183 S184 S186 C223 G224 W225 R285 R289
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0051731 polynucleotide 5'-hydroxyl-kinase activity
GO:0051736 ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity
Biological Process
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006396 RNA processing
GO:0006397 mRNA processing
GO:0031124 mRNA 3'-end processing
Cellular Component
GO:0005634 nucleus
GO:0005849 mRNA cleavage factor complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4oi1, PDBe:4oi1, PDBj:4oi1
PDBsum4oi1
PubMed24813946
UniProtP52874|CLP1_CAEEL Protein clpf-1 (Gene Name=clpf-1)

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