Structure of PDB 4nzv Chain A Binding Site BS01

Receptor Information
>4nzv Chain A (length=329) Species: 243274 (Thermotoga maritima MSB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HHHHHVINLKELKILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEA
EKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNHD
WKGLKLFGNFVTSISSDITFVMSFEPVDVEAKRGQKVRILPFPYPDESEA
LRKNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYAGIEQG
REIIINRALIPSVVDYAALGHIHSFREIQKQPLTIYPGSLIRIDFGEEAD
EKGAVFVELKRGEPPRYERIDASPLPLKTLYYKKIDTSALKSIRDFCRNF
PGYVRVVYEEDSGILPDLMGEIDNLVKIE
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain4nzv Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4nzv DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities.
Resolution1.901 Å
Binding residue
(original residue number in PDB)
D58 H180 H216
Binding residue
(residue number reindexed from 1)
D63 H185 H221
Annotation score4
Enzymatic activity
Enzyme Commision number 3.1.-.-
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0008408 3'-5' exonuclease activity
GO:0016787 hydrolase activity
Biological Process
GO:0006259 DNA metabolic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:4nzv, PDBe:4nzv, PDBj:4nzv
PDBsum4nzv
PubMed24316220
UniProtQ9X1X0|MRE11_THEMA DNA double-strand break repair protein Mre11 (Gene Name=mre11)

[Back to BioLiP]