Structure of PDB 4nqe Chain A Binding Site BS01

Receptor Information
>4nqe Chain A (length=264) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDSVTRQKEPRAPW
MAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSGSHTYQRMIGCE
LLEDGSTTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHE
LLYQKNWLEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALF
CKAHGFYPPEIYMTWMKNGEEIVQEIDYGDILPSGDGTYQAWASIELLYS
CHVEHSGVHMVLQV
Ligand information
Ligand ID2L4
InChIInChI=1S/C11H16N4O7/c16-2-1-12-7-9(14-11(22)15-10(7)21)13-3-5(18)8(20)6(19)4-17/h1-2,5-6,8,17-20H,3-4H2,(H3,13,14,15,21,22)/b12-1+/t5-,6+,8-/m0/s1
InChIKeyPUEQUELBQOQOOV-GJQDMXJLSA-N
SMILES
SoftwareSMILES
CACTVS 3.370OC[CH](O)[CH](O)[CH](O)CNC1=C(N=CC=O)C(=O)NC(=O)N1
CACTVS 3.370OC[C@@H](O)[C@@H](O)[C@@H](O)CNC1=C(N=CC=O)C(=O)NC(=O)N1
OpenEye OEToolkits 1.7.6C(C(C(C(CO)O)O)O)NC1=C(C(=O)NC(=O)N1)N=CC=O
ACDLabs 12.01O=C1NC(NCC(O)C(O)C(O)CO)=C(\N=C\C=O)C(=O)N1
OpenEye OEToolkits 1.7.6C(C(C(C(CO)O)O)O)NC1=C(C(=O)NC(=O)N1)/N=C/C=O
FormulaC11 H16 N4 O7
Name1-deoxy-1-({2,6-dioxo-5-[(E)-(2-oxoethylidene)amino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol;
5-(2-oxoethylideneamino)-6-D-ribitylaminouracil
ChEMBL
DrugBank
ZINCZINC000097654292
PDB chain4nqe Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4nqe T-cell activation by transitory neo-antigens derived from distinct microbial pathways.
Resolution2.1 Å
Binding residue
(original residue number in PDB)
Y7 R9 S24 K43 Y62 L66 W69 R94 I96 Y152 Q153 W156
Binding residue
(residue number reindexed from 1)
Y8 R10 S25 K44 Y63 L67 W70 R95 I97 Y153 Q154 W157
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:4nqe, PDBe:4nqe, PDBj:4nqe
PDBsum4nqe
PubMed24695216
UniProtQ95460|HMR1_HUMAN Major histocompatibility complex class I-related gene protein (Gene Name=MR1)

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