Structure of PDB 4m2z Chain A Binding Site BS01

Receptor Information

>4m2z Chain A (length=220) Species: 224324 (Aquifex aeolicus VF5) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

KMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFI
VDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKIN
ETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKD
YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGKS
KKEAEQRAAEELIKLLEESE

Ligand information

>4m2z Chain C (length=27) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

aaggucauucgcaagaguggccuugcg

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Receptor-Ligand Complex Structure

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Structure summary

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PDB	4m2z RNase III: Genetics and Function; Structure and Mechanism.
Resolution	2.85 Å
Binding residue (original residue number in PDB)	H27 V28 R97 N101 T103 H179 H180 K182 F184 K200 S201 K202
Binding residue (residue number reindexed from 1)	H26 V27 R96 N100 T102 H178 H179 K181 F183 K199 S200 K201

Enzymatic activity

Enzyme Commision number

3.1.26.3: ribonuclease III.

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003725	double-stranded RNA binding
GO:0004519	endonuclease activity
GO:0004525	ribonuclease III activity
GO:0042802	identical protein binding
GO:0046872	metal ion binding

	Biological Process
GO:0006364	rRNA processing
GO:0006396	RNA processing
GO:0006397	mRNA processing
GO:0008033	tRNA processing
GO:0010468	regulation of gene expression

	Cellular Component
GO:0005737	cytoplasm

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External links

PDB	RCSB:4m2z, PDBe:4m2z, PDBj:4m2z
PDBsum	4m2z
PubMed	24274754
UniProt	O67082\|RNC_AQUAE Ribonuclease 3 (Gene Name=rnc)

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