Structure of PDB 4lxy Chain A Binding Site BS01

Receptor Information
>4lxy Chain A (length=272) Species: 407148 (Campylobacter jejuni subsp. jejuni 81116) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HMIKICIAGKNNIAVNSLQFILKNYFEADQIVVIPNKNDKGIDSWQKSLL
KFALDNNIKIVTLDEIYNIEQIIFFSLEFDQIIKIENFKSDRLFNIHFSA
LPKYKGVFTSITPILNNELESGVTLHRIDNGIDTGNIIDQHCFPIDINDT
ARDLYFNYLKYGESIFKKNIQTIINNSYKDLKQTNINSSYFSRKDINLVH
KINFKKTSFEIHNQIRAFIFQEYQLPIINNSKIIKSILANEFIGYNVFEE
FENYFIISGIDGFKIIAQKLNK
Ligand information
Ligand ID1YA
InChIInChI=1S/C20H23N7O7/c21-20-25-16-15(18(32)26-20)23-11(7-22-16)8-27(9-28)12-3-1-10(2-4-12)17(31)24-13(19(33)34)5-6-14(29)30/h1-4,9,11,13,23H,5-8H2,(H,24,31)(H,29,30)(H,33,34)(H4,21,22,25,26,32)/t11-,13-/m0/s1
InChIKeyAUFGTPPARQZWDO-AAEUAGOBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)N(C[C@@H]2CNC3=C(N2)C(=O)NC(=N3)N)C=O
CACTVS 3.385NC1=NC2=C(N[CH](CN2)CN(C=O)c3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)C(=O)N1
CACTVS 3.385NC1=NC2=C(N[C@@H](CN2)CN(C=O)c3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)C(=O)N1
OpenEye OEToolkits 1.7.6c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)N(CC2CNC3=C(N2)C(=O)NC(=N3)N)C=O
ACDLabs 12.01O=C(O)C(NC(=O)c1ccc(cc1)N(C=O)CC3NC2=C(N=C(N)NC2=O)NC3)CCC(=O)O
FormulaC20 H23 N7 O7
NameN-{4-[{[(6S)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}(formyl)amino]benzoyl}-L-glutamic acid
ChEMBL
DrugBank
ZINC
PDB chain4lxy Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4lxy Structure of a sugar N-formyltransferase from Campylobacter jejuni.
Resolution1.64 Å
Binding residue
(original residue number in PDB)		F78 D79 Q80 I81 I82 N94 I127 D128 G130 D132 R192
Binding residue
(residue number reindexed from 1)		F79 D80 Q81 I82 I83 N95 I128 D129 G131 D133 R193
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 19:05:29 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4lxy', asym_id = 'A', bs = 'BS01', title = 'Structure of a sugar N-formyltransferase from Campylobacter jejuni.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4lxy', asym_id='A', bs='BS01', title='Structure of a sugar N-formyltransferase from Campylobacter jejuni.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0009058', uniprot = '', pdbid = '4lxy', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009058', uniprot='', pdbid='4lxy', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>