Structure of PDB 4lv5 Chain A Binding Site BS01

Receptor Information

>4lv5 Chain A (length=350) Species: 5811 (Toxoplasma gondii)

EAGDSFMRDLLKREEELIGYCREEALKEPAAMVEAVTATVWPQNAETTVD
SLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRS
ELERLHEATFAAARLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMP
AASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHG
HFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTA
TFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLA
FGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNEISSSLS

Ligand information

• Ligand ID: ADP
• InChI: InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
• InChIKey: XTWYTFMLZFPYCI-KQYNXXCUSA-N
• SMILES:
  OpenEye OEToolkits 1.5.0: c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
  CACTVS 3.341: Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
  ACDLabs 10.04: O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
  CACTVS 3.341: Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
  OpenEye OEToolkits 1.5.0: c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
• Formula: C10 H15 N5 O10 P2
• Name: ADENOSINE-5'-DIPHOSPHATE
• ChEMBL: CHEMBL14830
• DrugBank: DB16833
• ZINC: ZINC000012360703
• PDB chain: 4lv5 Chain A Residue 601

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4lv5 Murine IRGa6 bound to Toxoplasma ROP5B, a pseudokinase GDI
• Resolution: 1.7 Å
• Binding residue (original residue number in PDB): R241 G243 S246 V248 A261 K263 M337 A340 D343 D393 F396
• Binding residue (residue number reindexed from 1): R67 G69 S72 V74 A87 K89 M149 A152 D155 D205 F208
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0004672 protein kinase activity
• GO:0005524 ATP binding

Biological Process

• GO:0006468 protein phosphorylation

External links

• PDB: RCSB:4lv5, PDBe:4lv5, PDBj:4lv5
• PDBsum: 4lv5
• UniProt: F2YGR7