Structure of PDB 4ls7 Chain A Binding Site BS01

Receptor Information
>4ls7 Chain A (length=413) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MTKKRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAEEYPAKV
AAELKDFNVEDYMDKKEARKMDRFTQYAVVAAKMAVEDADLNITDEIAPR
VGVWVGSGIGGLETLESQFEIFLTKGPRRVSPFFVPMMIPDMATGQISIA
LGAKGVNSCTVTACATGTNSIGDAFKVIQRGDADVMVTGGTEAPLTRMSF
AGFSANKALSTNPDPKTASRPFDKNRDGFVMGEGAGIIVLEELEHALARG
AKIYGEIVGYGSTGDAYHITAPAQDGEGGARAMQEAIKDAGIAPEEIDYI
NAHGTSTYYNDKYETMAIKTVFGEHAHKLAVSSTKSMTGHLLGAAGGIEA
IFSILAIKEGVIPPTINIQTPDEECDLDYVPDEARRQELNYVLSNSLGFG
GHNATLIFKKYQS
Ligand information
Ligand ID1X9
InChIInChI=1S/C12H17NO3/c1-2-3-4-5-6-7-8-9(14)10-11(16-10)12(13)15/h2-3,5-6,10-11H,4,7-8H2,1H3,(H2,13,15)/b3-2+,6-5+/t10-,11-/m1/s1
InChIKeyGVEZIHKRYBHEFX-NQQPLRFYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC=CCC=CCCC(=O)[CH]1O[CH]1C(N)=O
ACDLabs 12.01O=C(CC/C=C/C/C=C/C)C1OC1C(=O)N
OpenEye OEToolkits 1.7.6CC=CCC=CCCC(=O)C1C(O1)C(=O)N
CACTVS 3.385C\C=C\C/C=C/CCC(=O)[C@H]1O[C@H]1C(N)=O
OpenEye OEToolkits 1.7.6C/C=C/C/C=C/CCC(=O)[C@@H]1[C@@H](O1)C(=O)N
FormulaC12 H17 N O3
NameCerulenin;
(2R,3S)-3-[(4E,7E)-nona-4,7-dienoyl]oxirane-2-carboxamide
ChEMBLCHEMBL45627
DrugBankDB01034
ZINCZINC000004102315
PDB chain4ls7 Chain A Residue 504 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4ls7 Structural insights into bacterial resistance to cerulenin.
Resolution1.674 Å
Binding residue
(original residue number in PDB)
G107 I108 A162 C163 F202 H302 H339 L341 F398
Binding residue
(residue number reindexed from 1)
G108 I109 A163 C164 F203 H303 H340 L342 F399
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) C163 H302 E313 K334 H339 L396 F398
Catalytic site (residue number reindexed from 1) C164 H303 E314 K335 H340 L397 F399
Enzyme Commision number 2.3.1.179: beta-ketoacyl-[acyl-carrier-protein] synthase II.
Gene Ontology
Molecular Function
GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0016746 acyltransferase activity
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups
Biological Process
GO:0006633 fatty acid biosynthetic process
Cellular Component
GO:0005829 cytosol

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:4ls7, PDBe:4ls7, PDBj:4ls7
PDBsum4ls7
PubMed24641521
UniProtO34340|FABF_BACSU 3-oxoacyl-[acyl-carrier-protein] synthase 2 (Gene Name=fabF)

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