Structure of PDB 4jxy Chain A Binding Site BS01

Receptor Information
>4jxy Chain A (length=311) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ENLYFQSMDLDHILSLAEPDMLAVNQLIQKQVNSDVSLINQLGFYIVNSG
GKRLRPLLTVLAARALNIQTEQHHTLAAIIEFIHTATLLHDDVVDTANEV
FGNQASVLVGDFLYTRSFQMMVTLDSMRVMQILSDATNVIAEGEVLQLMN
CNDPDTTEESYMEVIYSKTARLFEAATLLAGVLTKQSEAIENAMQDYGKY
LGTAFQLVDDIMDYAGDDLAEGKPTLPLLYAMWHGNEQQTAIIREAIETG
NGMDNLTPILETMEQTGALTYTKQQALKASQQAIDALSPIEESVYKEALI
GLAHISVERVA
Ligand information
Ligand IDGUA
InChIInChI=1S/C5H8O4/c6-4(7)2-1-3-5(8)9/h1-3H2,(H,6,7)(H,8,9)
InChIKeyJFCQEDHGNNZCLN-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(CC(=O)O)CC(=O)O
ACDLabs 10.04O=C(O)CCCC(=O)O
CACTVS 3.341OC(=O)CCCC(O)=O
FormulaC5 H8 O4
NameGLUTARIC ACID
ChEMBLCHEMBL1162495
DrugBankDB03553
ZINCZINC000000388706
PDB chain4jxy Chain A Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4jxy CRYSTAL STRUCTURE OF ISOPRENOID SYNTHASE PATL_3739 FROM Pseudoalteromonas atlantica
Resolution1.9 Å
Binding residue
(original residue number in PDB)		R130 Q133 I134 R173 L180 Q197
Binding residue
(residue number reindexed from 1)		R128 Q131 I132 R171 L178 Q195
Annotation score4
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 22 09:02:23 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4jxy', asym_id = 'A', bs = 'BS01', title = 'CRYSTAL STRUCTURE OF ISOPRENOID SYNTHASE PATL_3739 FROM Pseudoalteromonas atlantica'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4jxy', asym_id='A', bs='BS01', title='CRYSTAL STRUCTURE OF ISOPRENOID SYNTHASE PATL_3739 FROM Pseudoalteromonas atlantica')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004659,0008299', uniprot = '', pdbid = '4jxy', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004659,0008299', uniprot='', pdbid='4jxy', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>