Structure of PDB 4jfi Chain A Binding Site BS01

Receptor Information
>4jfi Chain A (length=127) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GAPATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLS
NGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYA
YGSAGSLPKIPSNATLFFEIELLDFKG
Ligand information
Ligand ID1KT
InChIInChI=1S/C28H32N2O8/c1-34-17-11-15-9-10-29-24(23(15)20(14-17)35-2)18-7-6-8-19(27(29)32)30(18)28(33)25(31)16-12-21(36-3)26(38-5)22(13-16)37-4/h11-14,18-19,24H,6-10H2,1-5H3/t18-,19+,24+/m1/s1
InChIKeyODLXCGSAEOWAKV-IMWIBFENSA-N
SMILES
SoftwareSMILES
CACTVS 3.370COc1cc2CCN3[C@@H]([C@H]4CCC[C@H](N4C(=O)C(=O)c5cc(OC)c(OC)c(OC)c5)C3=O)c2c(OC)c1
CACTVS 3.370COc1cc2CCN3[CH]([CH]4CCC[CH](N4C(=O)C(=O)c5cc(OC)c(OC)c(OC)c5)C3=O)c2c(OC)c1
ACDLabs 12.01O=C(c1cc(OC)c(OC)c(OC)c1)C(=O)N3C4C5c2c(OC)cc(OC)cc2CCN5C(=O)C3CCC4
OpenEye OEToolkits 1.7.6COc1cc2c(c(c1)OC)[C@@H]3[C@H]4CCC[C@H](N4C(=O)C(=O)c5cc(c(c(c5)OC)OC)OC)C(=O)N3CC2
OpenEye OEToolkits 1.7.6COc1cc2c(c(c1)OC)C3C4CCCC(N4C(=O)C(=O)c5cc(c(c(c5)OC)OC)OC)C(=O)N3CC2
FormulaC28 H32 N2 O8
Name1-[(9S,13R,13aR)-1,3-dimethoxy-8-oxo-5,8,9,10,11,12,13,13a-octahydro-6H-9,13-epiminoazocino[2,1-a]isoquinolin-14-yl]-2-(3,4,5-trimethoxyphenyl)ethane-1,2-dione
ChEMBL
DrugBank
ZINCZINC000035803180
PDB chain4jfi Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4jfi Increasing the efficiency of ligands for FK506-binding protein 51 by conformational control.
Resolution1.05 Å
Binding residue
(original residue number in PDB)		Y57 F67 D68 F77 V86 I87 W90 Y113 S118 K121
Binding residue
(residue number reindexed from 1)		Y45 F55 D56 F65 V74 I75 W78 Y101 S106 K109
Annotation score1
Binding affinityMOAD: Ki=18.1uM
PDBbind-CN: -logKd/Ki=4.74,Ki=18.1uM
Enzymatic activity
Catalytic site (original residue number in PDB) Y57 F67 D68 I87 Y113 F130
Catalytic site (residue number reindexed from 1) Y45 F55 D56 I75 Y101 F118
Enzyme Commision number 5.2.1.8: peptidylprolyl isomerase.
Gene Ontology
Molecular Function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity

View graph for
Molecular Function
External links
PDB RCSB:4jfi, PDBe:4jfi, PDBj:4jfi
PDBsum4jfi
PubMed23647266
UniProtQ13451|FKBP5_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP5 (Gene Name=FKBP5)

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