Structure of PDB 4g0r Chain A Binding Site BS01

Receptor Information
>4g0r Chain A (length=554) Species: 10799 (H-1 parvovirus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GIGVSTGTYDNQTTYKFLGDGWVEITAHASRLLHLGMPPSENYCRVTVHN
NQTTGHGTKVKGNMAYDDTHQQIWTPWSLVDANAWGVWFQPSDWQFIQNS
MESLNLDSLSQELFNVVVKTVTEQQGAGAIKVYNNDLTACMMVALDSNNI
LPYTPAAQTSETLGFYPWKPTAPAPYRYYFFMPRQLSVTSSNSAEGTQIT
DTIGEPQALNSQFFTIENTLPITLLRTGDEFTTGTYIFNTDPLKLTHTWQ
TNRHLGMPPRITDLPTSDTATASLTANGDRFGSTQTQNVNYVTEALRTRP
AQIGFMQPHDNFEANRGGPFKVPVVPLDITAGEDHDANGAIRFNYGKQHG
EDWAKQGAAPERYTWDAIDSAAGRDTARCFVQSAPISIPPNQNQILQRED
AIAGRTNMHYTNVFNSYGPLSAFPHPDPIYPNGQIWDKELDLEHKPRLHV
TAPFVCKNNPPGQLFVRLGPNLTDQFDPNSTTVSRIVTYSTFYWKGILKF
KAKLRPNLTWNPVYQATTDSVANSYMNVKKWLPSATGNMHSDPLICRPVP
HMTY
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4g0r Structural characterization of h-1 parvovirus: comparison of infectious virions to empty capsids.
Resolution2.7 Å
Binding residue
(original residue number in PDB)
L146 L184 S186 N187 T272 Y275 I276 N497 N498 G501
Binding residue
(residue number reindexed from 1)
L109 L145 S147 N148 T233 Y236 I237 N458 N459 G462
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:4g0r, PDBe:4g0r, PDBj:4g0r
PDBsum4g0r
PubMed23449783
UniProtP03136|CAPSD_PAVHH Capsid protein VP1

[Back to BioLiP]