Structure of PDB 4fsj Chain A Binding Site BS01

Receptor Information
>4fsj Chain A (length=315) Species: 12287 (Flock House virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QTAPVPQQTRLSQPGLAFLKCAFAPPDFNTDPGKGIPDRFEGKVVSRKDV
LNQSISFTAGQDTFILIAPTPGVAYWSASVPAGTFPTSATTFNPVNYPGF
TSMFGTTSTSRSDQVSSFRYASMNVGIYPTSNLMQFAGSITVWKCPVKLS
TVQFPVATDPATSSLVHTLVGLDGVLAVGPDNFSESFIKGVFSQSACNEP
DFEFNDILEGIQTLPPANVSLGSTGQPFTMDSGAEATSGVVGWGNMDTIV
IRVSAPEGAVNSAILKAWSCIEYRPNPNAMLYQFGHDSPPLDEVALQEYR
TVARSLPVAVIAAQN
Ligand information
>4fsj Chain D (length=18) Species: 12287 (Flock House virus) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ASMWERVKSIIKSSLAAA
Receptor-Ligand Complex Structure
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PDB4fsj Structural study of virus assembly intermediates reveals maturation event sequence and a staging position for externalized lytic peptides
Resolution3.5 Å
Binding residue
(original residue number in PDB)		K68 F71 D75 F76 E346 S353 Q362 N363
Binding residue
(residue number reindexed from 1)		K20 F23 D27 F28 E298 S305 Q314 N315
Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:4fsj, PDBe:4fsj, PDBj:4fsj
PDBsum4fsj
PubMed
UniProtP12870|CAPSD_FHV Capsid protein alpha (Gene Name=alpha)

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