Structure of PDB 4eh1 Chain A Binding Site BS01
Receptor Information
>4eh1 Chain A (length=237) Species:
243277
(Vibrio cholerae O1 biovar El Tor str. N16961) [
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RDGRTFVVREKQVESAYVTSFVLVPADGGAVLDYQPGQYIGIEVTPEGSD
YREIRQYSLSHASNGREYRISVKREGVGSDNPGLVSHYLHNNVKVGDSVK
LYAPAGDFFYVERERPVVLISAGVGATPMQAILHTLAKQNKSGVTYLYAC
NSAKEHTFAQETAQLIAQQGWMQQVWYRDESADDVLQGEMQLAELILPIE
DGDFYLCGPIGFMQYVVKQLLALGVDKARIHYEVFGP
Ligand information
Ligand ID
FAD
InChI
InChI=1S/C27H33N9O15P2/c1-10-3-12-13(4-11(10)2)35(24-18(32-12)25(42)34-27(43)33-24)5-14(37)19(39)15(38)6-48-52(44,45)51-53(46,47)49-7-16-20(40)21(41)26(50-16)36-9-31-17-22(28)29-8-30-23(17)36/h3-4,8-9,14-16,19-21,26,37-41H,5-7H2,1-2H3,(H,44,45)(H,46,47)(H2,28,29,30)(H,34,42,43)/t14-,15+,16+,19-,20+,21+,26+/m0/s1
InChIKey
VWWQXMAJTJZDQX-UYBVJOGSSA-N
SMILES
Software
SMILES
CACTVS 3.341
Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO[P@](O)(=O)O[P@@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)c2cc1C
OpenEye OEToolkits 1.5.0
Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O)O
OpenEye OEToolkits 1.5.0
Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](CO[P@@](=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O)O
CACTVS 3.341
Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)c2cc1C
ACDLabs 10.04
O=C2C3=Nc1cc(c(cc1N(C3=NC(=O)N2)CC(O)C(O)C(O)COP(=O)(O)OP(=O)(O)OCC6OC(n5cnc4c(ncnc45)N)C(O)C6O)C)C
Formula
C27 H33 N9 O15 P2
Name
FLAVIN-ADENINE DINUCLEOTIDE
ChEMBL
CHEMBL1232653
DrugBank
DB03147
ZINC
ZINC000008215434
PDB chain
4eh1 Chain A Residue 301 [
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Receptor-Ligand Complex Structure
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PDB
4eh1
Crystal Structure of the Flavohem-like-FAD/NAD Binding Domain of Nitric Oxide Dioxygenase from Vibrio cholerae O1 biovar El Tor
Resolution
2.2 Å
Binding residue
(original residue number in PDB)
Y40 R56 Q57 Y58 S59 S72 V73 E76 N82 G84 L85 V86 S87 T128 E234 F236
Binding residue
(residue number reindexed from 1)
Y39 R55 Q56 Y57 S58 S71 V72 E75 N81 G83 L84 V85 S86 T127 E233 F235
Annotation score
2
Enzymatic activity
Enzyme Commision number
1.14.12.17
: nitric oxide dioxygenase.
Gene Ontology
Molecular Function
GO:0016491
oxidoreductase activity
View graph for
Molecular Function
External links
PDB
RCSB:4eh1
,
PDBe:4eh1
,
PDBj:4eh1
PDBsum
4eh1
PubMed
UniProt
Q9KMY3
|HMP_VIBCH Flavohemoprotein (Gene Name=hmp)
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