Structure of PDB 4d6n Chain A Binding Site BS01

Receptor Information

>4d6n Chain A (length=183) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

ENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAP
LMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMR
EQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLD
DHRHGVYVLNISLRDRIKFVHTILSSHLNPLPP

Ligand information

>4d6n Chain B (length=14) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

gccttgccgggtaa

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	4d6n Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
Resolution	2.35 Å
Binding residue (original residue number in PDB)	D21 T41 K43 T76 R124 T150 H152 D154 R157 N164 S166 L167
Binding residue (residue number reindexed from 1)	D17 T37 K39 T72 R120 T146 H148 D150 R153 N160 S162 L163

Enzymatic activity

Enzyme Commision number

3.1.-.-

Gene Ontology

	Molecular Function
GO:0004519	endonuclease activity

	Biological Process
GO:0006314	intron homing
GO:0016539	intein-mediated protein splicing

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:4d6n, PDBe:4d6n, PDBj:4d6n
PDBsum	4d6n
PubMed	25486305
UniProt	P21505\|DMO1_DESMO Homing endonuclease I-DmoI

[Back to BioLiP]