Structure of PDB 4c9f Chain A Binding Site BS01

Receptor Information
>4c9f Chain A (length=132) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LCRLCPWDWTFLLGNCYFFSKSQRNWNDAVTACKEVKAQLVIINSDEEQT
FLQQTSKAKGPTWMGLSDLKKEATWLWVDGSTLSSRFQKYWNRGEPNNIG
EEDCVEFAGDGWNDSKCELKKFWICKKSATPC
Ligand information
Ligand IDGQ1
InChIInChI=1S/C6H12O9S/c7-1-2-5(15-16(11,12)13)3(8)4(9)6(10)14-2/h2-10H,1H2,(H,11,12,13)/t2-,3-,4-,5-,6+/m1/s1
InChIKeyLOTQRUGOUKUSEY-UKFBFLRUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C1C(C(C(C(O1)O)O)O)OS(=O)(=O)O)O
CACTVS 3.385OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O[S](O)(=O)=O
ACDLabs 12.01O=S(=O)(O)OC1C(OC(O)C(O)C1O)CO
OpenEye OEToolkits 1.7.6C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)OS(=O)(=O)O)O
CACTVS 3.385OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O[S](O)(=O)=O
FormulaC6 H12 O9 S
Name4-O-sulfo-alpha-D-glucopyranose;
4-O-sulfo-alpha-D-glucose;
4-O-sulfo-D-glucose;
4-O-sulfo-glucose
ChEMBL
DrugBank
ZINCZINC000135965335
PDB chain4c9f Chain E Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4c9f Structural Basis for Selective Recognition of Endogenous and Microbial Polysaccharides by Macrophage Receptor Sign-R1
Resolution2.6 Å
Binding residue
(original residue number in PDB)		N287 N288 E292
Binding residue
(residue number reindexed from 1)		N97 N98 E102
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:4c9f, PDBe:4c9f, PDBj:4c9f
PDBsum4c9f
PubMed25450767
UniProtQ8CJ91|C209B_MOUSE CD209 antigen-like protein B (Gene Name=Cd209b)

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