Structure of PDB 4c7f Chain A Binding Site BS01

Receptor Information
>4c7f Chain A (length=494) Species: 1902 (Streptomyces coelicolor) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AEPTPLDRVIPAPASVEPGGAPYRITRGTHIRVDDSREARRVGDYLADLL
RPATGYRLPVTSHGHGGIRLRLAEGPYGDEGYRLDSGREGVTITARKAAG
LFHGVQTLRQLLPAAVEKDSAQPGPWLVAGGTIEDTPRYAWRSAMLDVSR
HFFSVDEVKRYIDRVALYKYNKLHLHISDDQGWRLAIDSWPRLATYGGST
EVGGGPGGHYTKADYEEIVRYAASRHLEVVPEIDMPGHTNAALASYAELN
CDGVAPPLYTGTKVGFSTLCVDKDVTYDFVDDVLGELAALTPGRYLHIGG
DEAHSTPQADFVAFMKRVQPIVAKYGKTVVGWHQLAGAEPVEGALVQYWG
LDRTSDAEKAQVAAAARNGTGLILSPADRTYLDMKYTKDTPLGLSWAGYV
EVRRSYDWDPAAYLPGAPAEAVRGVEAPLWTETLSDPDQLDFMAFPRLPG
VAELGWSPASTHDWDTYKVRLAGQAPHWEAMGIDYYRSPQVPWT
Ligand information
Ligand IDGC2
InChIInChI=1S/C10H18N2O4/c1-5(13)11-6-4-12-3-2-7(14)8(12)10(16)9(6)15/h6-10,14-16H,2-4H2,1H3,(H,11,13)/t6-,7-,8+,9+,10+/m0/s1
InChIKeyIHKWXDCSAKJQKM-SRQGCSHVSA-N
SMILES
SoftwareSMILES
CACTVS 3.352CC(=O)N[CH]1CN2CC[CH](O)[CH]2[CH](O)[CH]1O
CACTVS 3.352CC(=O)N[C@H]1CN2CC[C@H](O)[C@@H]2[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.6.1CC(=O)NC1CN2CCC(C2C(C1O)O)O
OpenEye OEToolkits 1.6.1CC(=O)N[C@H]1C[N@@]2CC[C@@H]([C@@H]2[C@H]([C@@H]1O)O)O
ACDLabs 10.04O=C(NC2C(O)C(O)C1N(CCC1O)C2)C
FormulaC10 H18 N2 O4
Name6-ACETAMIDO-6-DEOXY-CASTANOSPERMINE;
N-[(1S,6S,7R,8R,8AR)-1,7,8-TRIHYDROXYOCTAHYDROINDOLIZIN-6-YL]ACETAMIDE
ChEMBLCHEMBL1232979
DrugBank
ZINCZINC000013547934
PDB chain4c7f Chain A Residue 1511 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4c7f Structure and Activity of the Streptomyces Coelicolor A3(2) Beta-N-Acetylhexosaminidase Provides Further Insight Into Gh20 Family Catalysis and Inhibition.
Resolution2.0 Å
Binding residue
(original residue number in PDB)
R150 D301 E302 W332 W349 Y381 W396 W430 E432
Binding residue
(residue number reindexed from 1)
R150 D301 E302 W332 W349 Y381 W396 W430 E432
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) D301 E302
Catalytic site (residue number reindexed from 1) D301 E302
Enzyme Commision number 3.2.1.52: beta-N-acetylhexosaminidase.
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004563 beta-N-acetylhexosaminidase activity
GO:0016787 hydrolase activity
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0030203 glycosaminoglycan metabolic process
Cellular Component
GO:0016020 membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:4c7f, PDBe:4c7f, PDBj:4c7f
PDBsum4c7f
PubMed24559145
UniProtQ9L068

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