Structure of PDB 4br7 Chain A Binding Site BS01
Receptor Information
>4br7 Chain A (length=356) Species:
446
(Legionella pneumophila) [
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PCEKHSCIAVIDAGSTGSRLHIYSYDTDDTNTPIHIEEIWNKKIKPGFAS
IQPNSVTIDAYLTMLLADAPIHNIPVYFYATAGMRLLPQSQQKKYYDELD
YWFRQQSQWQLVEAKTITGNDEALFDWLAVNYKLDTLKSVQNKSVGVMDM
GGASVQIVFPMPKNAEISKHNQVELNIYGQNINLYVHSFLGLGQTEMSHQ
FLNSPSCFANDYPLPDGESGQGNAPSCKEEVTSLMNSVHKVNQQIQPLLA
LNPVNEWYSIGGISNLASSQLFHFENSELTNQSLLQQGDNQICHQQWDIL
NGQYPDDEYLYQYCLLSSYYYALMVDGYGINPNQTIHYIPPEQNLDWTIG
VVLHRA
Ligand information
Ligand ID
AU1
InChI
InChI=1S/C10H16N6O9P2/c11-8-5-9(13-2-12-8)16(3-14-5)10-7(18)6(17)4(25-10)1-24-27(22,23)15-26(19,20)21/h2-4,6-7,10,17-18H,1H2,(H2,11,12,13)(H4,15,19,20,21,22,23)/t4-,6-,7-,10-/m1/s1
InChIKey
FJNYKURUYWTJIG-KQYNXXCUSA-N
SMILES
Software
SMILES
CACTVS 3.370
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)N[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.7.6
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(NP(=O)(O)O)O)O)O)N
OpenEye OEToolkits 1.7.6
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(NP(=O)(O)O)O)O)O)N
ACDLabs 12.01
O=P(O)(O)NP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.370
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)N[P](O)(O)=O)[CH](O)[CH]3O
Formula
C10 H16 N6 O9 P2
Name
5'-O-[(R)-hydroxy(phosphonoamino)phosphoryl]adenosine;
Adenosine 5-(alpha,beta-imido)diphosphate
ChEMBL
CHEMBL576570
DrugBank
ZINC
ZINC000013508991
PDB chain
4br7 Chain A Residue 1394 [
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Receptor-Ligand Complex Structure
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PDB
4br7
Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Resolution
1.8 Å
Binding residue
(original residue number in PDB)
Q231 G299 N302 L303 Y346 Y350
Binding residue
(residue number reindexed from 1)
Q194 G262 N265 L266 Y309 Y313
Annotation score
1
Enzymatic activity
Enzyme Commision number
3.6.1.5
: apyrase.
Gene Ontology
Molecular Function
GO:0000166
nucleotide binding
GO:0016787
hydrolase activity
GO:0046872
metal ion binding
View graph for
Molecular Function
External links
PDB
RCSB:4br7
,
PDBe:4br7
,
PDBj:4br7
PDBsum
4br7
PubMed
23830739
UniProt
Q5ZUA2
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