Structure of PDB 3zgo Chain A Binding Site BS01

Receptor Information

>3zgo Chain A (length=318) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

GSGEADMDFLRNLFSQKERLLDELTLEGVARYMQSERCRRVICLVGAGIS
TSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKEL
YPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHG
TFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGES
PPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKE
KAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGWK
KELEDLVRREHASIDAQS

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

3zgo Chain A Residue 400 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	3zgo Crystal Structure Analysis of Human Sirt2 and its Adp-Ribose Complex
Resolution	1.63 Å
Binding residue (original residue number in PDB)	C195 C200 C221 C224
Binding residue (residue number reindexed from 1)	C157 C162 C183 C186
Annotation score	1

Enzymatic activity

Catalytic site (original residue number in PDB)	P94 D95 F96 R97 N168 D170 H187
Catalytic site (residue number reindexed from 1)	P56 D57 F58 R59 N130 D132 H149
Enzyme Commision number	2.3.1.- 2.3.1.286: protein acetyllysine N-acetyltransferase.

Gene Ontology

	Molecular Function
GO:0017136	NAD-dependent histone deacetylase activity
GO:0051287	NAD binding
GO:0070403	NAD+ binding

View graph for
Molecular Function

External links

PDB	RCSB:3zgo, PDBe:3zgo, PDBj:3zgo
PDBsum	3zgo
PubMed	23454361
UniProt	Q8IXJ6\|SIR2_HUMAN NAD-dependent protein deacetylase sirtuin-2 (Gene Name=SIRT2)

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