Structure of PDB 3wzu Chain A Binding Site BS01

Receptor Information
>3wzu Chain A (length=270) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GYLTIGGQRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRR
SGNKVVLKSHDCPYIVQCFGTFITNTDVFIAMELMGTCAEKLKKRMQGPI
PERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGA
GCAAYMAPERIDPPPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVL
TKVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFIKR
YETLEVDVASWFKDVMAKTE
Ligand information
Ligand ID1FM
InChIInChI=1S/C19H22O7/c1-11-5-3-7-14(20)18(23)15(21)8-4-6-12-9-13(25-2)10-16(22)17(12)19(24)26-11/h3-4,6-7,9-11,15,18,21-23H,5,8H2,1-2H3/b6-4+,7-3-/t11-,15-,18+/m0/s1
InChIKeyNEQZWEXWOFPKOT-BYRRXHGESA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C1OC(CC=CC(=O)C(O)C(O)CC=Cc2cc(OC)cc(O)c12)C
OpenEye OEToolkits 1.7.6CC1CC=CC(=O)C(C(CC=Cc2cc(cc(c2C(=O)O1)O)OC)O)O
CACTVS 3.370COc1cc(O)c2C(=O)O[CH](C)CC=CC(=O)[CH](O)[CH](O)CC=Cc2c1
CACTVS 3.370COc1cc(O)c2C(=O)O[C@@H](C)C\C=C/C(=O)[C@@H](O)[C@@H](O)C\C=C\c2c1
OpenEye OEToolkits 1.7.6C[C@H]1C/C=C\C(=O)[C@H]([C@H](C/C=C/c2cc(cc(c2C(=O)O1)O)OC)O)O
FormulaC19 H22 O7
Name(3S,5Z,8S,9S,11E)-8,9,16-trihydroxy-14-methoxy-3-methyl-3,4,9,10-tetrahydro-1H-2-benzoxacyclotetradecine-1,7(8H)-dione;
(5Z)-7-Oxozeaenol
ChEMBLCHEMBL1077979
DrugBank
ZINCZINC000014852066
PDB chain3wzu Chain A Residue 600 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3wzu 5Z-7-Oxozeaenol covalently binds to MAP2K7 at Cys218 in an unprecedented manner.
Resolution3.01 Å
Binding residue
(original residue number in PDB)
G145 T146 M212 E213 M215 C218 K221 L266
Binding residue
(residue number reindexed from 1)
G26 T27 M82 E83 M85 C88 K91 L136
Annotation score1
Binding affinityPDBbind-CN: -logKd/Ki=5.89,IC50=1.3uM
BindingDB: IC50=1300nM
Enzymatic activity
Catalytic site (original residue number in PDB) D259 K261 S263 N264 D277 C296
Catalytic site (residue number reindexed from 1) D129 K131 S133 N134 D147 C152
Enzyme Commision number 2.7.12.2: mitogen-activated protein kinase kinase.
Gene Ontology
Molecular Function
GO:0004672 protein kinase activity
GO:0005524 ATP binding
Biological Process
GO:0006468 protein phosphorylation

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:3wzu, PDBe:3wzu, PDBj:3wzu
PDBsum3wzu
PubMed25529738
UniProtO14733|MP2K7_HUMAN Dual specificity mitogen-activated protein kinase kinase 7 (Gene Name=MAP2K7)

[Back to BioLiP]