Structure of PDB 3vzy Chain A Binding Site BS01

Receptor Information

>3vzy Chain A (length=226) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168)

MYDVTEWKHVFKLDPNKDLPDEQLEILCESGTDAVIIGGSDGVTEDNVLR
MMSKVRRFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKA
MKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSE
LLQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE
HADVIVVGNAVYEDFDRALKTVAAVK

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 3vzy Chain A Residue 701

Receptor-Ligand Complex Structure

Structure summary

• PDB: 3vzy Insights into TIM-barrel prenyl transferase mechanisms: crystal structures of PcrB from Bacillus subtilis and Staphylococcus aureus
• Resolution: 1.63 Å
• Binding residue (original residue number in PDB): R56 F58
• Binding residue (residue number reindexed from 1): R56 F58
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 2.5.1.n9: heptaprenylglyceryl phosphate synthase.

Gene Ontology

Molecular Function

• GO:0000287 magnesium ion binding
• GO:0002094 polyprenyltransferase activity
• GO:0016740 transferase activity
• GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
• GO:0046872 metal ion binding

Biological Process

• GO:0006650 glycerophospholipid metabolic process
• GO:0008654 phospholipid biosynthetic process
• GO:0046474 glycerophospholipid biosynthetic process

External links

• PDB: RCSB:3vzy, PDBe:3vzy, PDBj:3vzy
• PDBsum: 3vzy
• PubMed: 23322418
• UniProt: O34790|PCRB_BACSU Heptaprenylglyceryl phosphate synthase (Gene Name=pcrB)