Structure of PDB 3vwj Chain A Binding Site BS01

Receptor Information
>3vwj Chain A (length=252) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FPLRCLQISSFANSSWTRTDGLAWLGELQTHSWSNDSDTVRSLKPWSQGT
FSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRLSYPLELQVSAGCEVSNN
FFHVAFQGKDILSFQGTSWEPTQEAPLWVNLAIQVLNQDKWTRETVQWLL
NGTCPQFVSGLLESGKSELKKQVKPKAWLSRGPSPGRLLLVCHVSGFYPK
PVWVKWMEQQGTQPGDILPNADETWYLRATLDVSCRVKHSSLEGQDIVLY
WH
Ligand information
Ligand IDDB3
InChIInChI=1S/C44H83NO9/c1-3-5-7-9-11-13-15-17-18-19-20-21-23-25-27-29-31-33-39(48)45-36(35-53-44-43(52)42(51)41(50)38(34-46)54-44)40(49)37(47)32-30-28-26-24-22-16-14-12-10-8-6-4-2/h11,13,17-18,36-38,40-44,46-47,49-52H,3-10,12,14-16,19-35H2,1-2H3,(H,45,48)/b13-11+,18-17-/t36-,37+,38+,40-,41-,42-,43+,44-/m0/s1
InChIKeyWSXMIFGRYXQZQZ-HJCGRHBQSA-N
SMILES
SoftwareSMILES
CACTVS 3.370CCCCCCCCCCCCCC[C@@H](O)[C@@H](O)[C@H](CO[C@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O)NC(=O)CCCCCCCCC\C=C/C/C=C/CCCCC
ACDLabs 12.01O=C(NC(COC1OC(C(O)C(O)C1O)CO)C(O)C(O)CCCCCCCCCCCCCC)CCCCCCCCC\C=C/C/C=C/CCCCC
OpenEye OEToolkits 1.7.0CCCCCCCCCCCCCCC(C(C(COC1C(C(C(C(O1)CO)O)O)O)NC(=O)CCCCCCCCCC=CCC=CCCCCC)O)O
OpenEye OEToolkits 1.7.0CCCCCCCCCCCCCC[C@H]([C@H]([C@H](CO[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)NC(=O)CCCCCCCCC/C=C\C/C=C/CCCCC)O)O
CACTVS 3.370CCCCCCCCCCCCCC[CH](O)[CH](O)[CH](CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)NC(=O)CCCCCCCCCC=CCC=CCCCCC
FormulaC44 H83 N O9
Name(11Z,14E)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]icosa-11,14-dienamide
ChEMBL
DrugBank
ZINCZINC000098208788
PDB chain3vwj Chain A Residue 303 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3vwj Human and mouse type I natural killer T cell antigen receptors exhibit different fine specificities for CD1d-antigen complex
Resolution3.093 Å
Binding residue
(original residue number in PDB)
L13 Q14 L29 H38 Y73 S76 F77 D80 L96 F114 W131 D151 W153 T154
Binding residue
(residue number reindexed from 1)
L6 Q7 L22 H31 Y66 S69 F70 D73 L89 F102 W119 D139 W141 T142
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:3vwj, PDBe:3vwj, PDBj:3vwj
PDBsum3vwj
PubMed22995911
UniProtP15813|CD1D_HUMAN Antigen-presenting glycoprotein CD1d (Gene Name=CD1D)

[Back to BioLiP]