Structure of PDB 3vth Chain A Binding Site BS01

Receptor Information
>3vth Chain A (length=753) Species: 273068 (Caldanaerobacter subterraneus subsp. tengcongensis MB4) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RGRVPQIQARQINIFGIVQGVGFRPFVFNIAQKYNLKGIVYNNSSGLYIE
VEGEEKDIEAFIREIKENPPSLSVIDEIQVREVEVKEYKDFKIVGSKEDG
GFVPVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYD
RAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDCGPSLSFVGEGCFD
DEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRYGKPF
AVMMRDVEEVKKYCIVSPEEERLLLSQRRPIVLLKKKGEKLAKGIADDLD
TLGVMLPYAPIHYLLMEEIDFPIVMTSGNVSEEPICKDNEEALEKLKDIA
DVFLLNNRDIVNRIDDSVTSFNAGAERIIRRARGYAPQPILLKKEVKASI
LAVGGFYKNTFCMTKGHYAFISHHIGDLDNEKAFNYYIEQIERYKKLFRV
DPEVVAHDMHKGYLSTQYAKSLDLPKIEVQHHHAHIASCMAEHNLDEKVI
GIAYDGTGYGTDGNVWGAEILVCDLKSFERIAHLKYKPLPGNELAIKKIY
RTALGFIFDNISFYKNFVEQVDSRELDIILKQIDRKINTAYVSSMGRFFD
AVAALIGVRKEVLFEGQAAMELESLMAESEEYYEYEILKEDRYVIDPELI
LRQIYEDYMKGFEKSYISAKFHNTVVNFTYDLANLIRKETGINKVVLSGG
SFQNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGGISLGQAVIANKILEGS
AWS
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain3vth Chain A Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3vth Structural basis for the reaction mechanism of S-carbamoylation of HypE by HypF in the maturation of [NiFe]-hydrogenases
Resolution2.0 Å
Binding residue
(original residue number in PDB)		C114 C117 C136 C139
Binding residue
(residue number reindexed from 1)		C112 C115 C134 C137
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.1.7: acylphosphatase.
6.2.-.-
Gene Ontology
Molecular Function
GO:0003725 double-stranded RNA binding
GO:0003998 acylphosphatase activity
GO:0008270 zinc ion binding
GO:0016743 carboxyl- or carbamoyltransferase activity
GO:0016787 hydrolase activity
GO:0016874 ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0046944 protein carbamoylation
GO:0051604 protein maturation

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3vth, PDBe:3vth, PDBj:3vth
PDBsum3vth
PubMed22740694
UniProtQ8RDB0

[Back to BioLiP]