Structure of PDB 3vm5 Chain A Binding Site BS01

Receptor Information
>3vm5 Chain A (length=499) Species: 8090 (Oryzias latipes) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QHNPNTRDGRTAIVHLFEWRWADIAAECERFLGPKGFAGVQISPPNEHIL
VSSPWRPWWQRYQPISYNLCSRSGGENELRDMITRCNNVGVNVYVDAVIN
HMCGAGGGEGTHSSCGSWFNANNKDFPSVPYSNLDFNDGKCKTGSGNIEN
YGDPYQVRDCRLVGLLDLALEKDYVRGKVADFMNKLIDMGVAGFRVDACK
HMWPGDLDNVYRRLNNLNTKWFPGGSRPFIFQEVIDLGGEPITTGEYVGL
GRVTEFKYGARLGELFRKWNGQKLSYTKNWGEGWGFMADGNAVVFTDNHD
NQRGHGAGGASILTFWDPRLYKMAVGYMLAHPYGFTRVMSSYSWDRNFVN
GKDENDWIGPPSNGDGSTKPVPINPDQTCGDGWVCEHRWRQIMNMVQFRN
VVNGQPHANWWDNGNNQVAFGRGNRGFIVFNNDDWALDVTLNTGLPGGTY
CDVISGNKDGGSCTGKQITVGGDGRAHFYINNSEEDPFIAIHADSKLHH
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain3vm5 Chain A Residue 506 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3vm5 Structural and functional characterization of recombinant medaka fish alpha-amylase expressed in yeast Pichia pastoris.
Resolution2.85 Å
Binding residue
(original residue number in PDB)		N100 R158 D167 H201
Binding residue
(residue number reindexed from 1)		N100 R158 D167 H201
Annotation score4
Enzymatic activity
Enzyme Commision number 3.2.1.1: alpha-amylase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004556 alpha-amylase activity
GO:0016160 amylase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0043169 cation binding
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3vm5, PDBe:3vm5, PDBj:3vm5
PDBsum3vm5
PubMed22613096
UniProtH2N0D4|AMY_ORYLA Alpha-amylase

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