Structure of PDB 3vkd Chain A Binding Site BS01

Receptor Information
>3vkd Chain A (length=253) Species: 566461 (Streptomyces viridosporus ATCC 14672) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
APPLWRPGRVLARLREHQPGPVHIIDPFKVPVTEAVEKAAELTRLGFAAV
LLASTDYESFESHMEPYVAAVKAATPLPVVLHFPPRPGAGFPVVRGADAL
LLPALLGSGDDYFVWKSFLETLAAFPGRIPREEWPELLLTVALTFGEDPR
TGDLLGTVPVSTASTEEIDRYLHVARAFGFHMVYLYSRNEHVPPEVVRHF
RKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQPDWRSALAE
IAG
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain3vkd Chain A Residue 800 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3vkd Insights into the mechanism of the antibiotic-synthesizing enzyme MoeO5 from crystal structures of different complexes
Resolution1.66 Å
Binding residue
(original residue number in PDB)		L137 A138 F140
Binding residue
(residue number reindexed from 1)		L122 A123 F125
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016740 transferase activity
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0046872 metal ion binding
Biological Process
GO:0008654 phospholipid biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3vkd, PDBe:3vkd, PDBj:3vkd
PDBsum3vkd
PubMed22431288
UniProtA0A011

[Back to BioLiP]