Structure of PDB 3v3w Chain A Binding Site BS01

Receptor Information

>3v3w Chain A (length=397) Species: 498211 (Cellvibrio japonicus Ueda107) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MKIVDAKVIVTCPGRNFVTLKIVTDQGIYGIGDATLNGREKSVVSYLEDY
LIPVLIGRDPQQIEDIWQFFYRGAYWRRGPVGMTALAAIDVALWDIKAKL
ANMPLYQLLGGKSRERILSYTHANGKDLDSTLEAVRKAKDKGYKAIRVQC
GIPGIAKTYGVSYEPADADLPSVEVWSTEKYLNYIPDVFAAVRKEFGPDI
HLLHDVHHRLTPIEAARLGKALEPYHLFWMEDAVPAENQESFKLIRQHTT
TPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAGGISQMRRIADFASLF
HVRTGFHGATDLSPVCMGAALHFDYWVPNFGIQEHMAHSEQMNAVFPHAY
TFNDGYFTPGEKPGHGVDIDEKLAAQYPYKRACLPVNRLEDGTLWHW

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

3v3w Chain A Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	3v3w Crystal structure of an enolase from the soil bacterium Cellvibrio japonicus (TARGET EFI-502161) with bound MG and glycerol
Resolution	1.4 Å
Binding residue (original residue number in PDB)	D210 E236 E262
Binding residue (residue number reindexed from 1)	D205 E231 E257
Annotation score	1

Enzymatic activity

Catalytic site (original residue number in PDB)	L36 R39 H122 K144 R147 Q149 Y159 E184 D210 H212 E236 G261 E262 V263 R283 T285 F311 H312 G313 A314 E339 W402
Catalytic site (residue number reindexed from 1)	L36 R39 H122 K144 R147 Q149 Y159 E179 D205 H207 E231 G256 E257 V258 R278 T280 F306 H307 G308 A309 E334 W397
Enzyme Commision number	4.2.1.- 4.2.1.8: mannonate dehydratase.

Gene Ontology

	Molecular Function
GO:0000287	magnesium ion binding
GO:0008927	mannonate dehydratase activity
GO:0016829	lyase activity
GO:0046872	metal ion binding

	Biological Process
GO:0009063	amino acid catabolic process
GO:0016052	carbohydrate catabolic process

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Molecular Function

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Biological Process

External links

PDB	RCSB:3v3w, PDBe:3v3w, PDBj:3v3w
PDBsum	3v3w
PubMed
UniProt	B3PDB1\|MAND_CELJU D-galactonate dehydratase family member RspA (Gene Name=rspA)

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