Structure of PDB 3tm8 Chain A Binding Site BS01

Receptor Information
>3tm8 Chain A (length=309) Species: 264462 (Bdellovibrio bacteriovorus HD100) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HMDYVSIRVSTLRGDQKIDFNAYVKINDKMILYLRRGDSFEGERLKRLKD
KKLRKMYILTDEENSYRTYLQKNIETAYDDTTGKDIQTRADIIQGSQQNN
AEEVFENPENVESYNYCKDAAGKYVNFIMSNAQALSAVMNIENTDKTISH
HGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYGHHHSPLNLNQPLD
SMSPEDLALWKKHPIEGAQKVQDKKHFDQTVINIIGQHEETINGTGPKGL
REKDMDPLAVLVSSANAMDRLITFEGVPKAEAAKKLMIDHVGKHPLQHIQ
HLNDILKGL
Ligand information
Ligand IDPO4
InChIInChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3
InChIKeyNBIIXXVUZAFLBC-UHFFFAOYSA-K
SMILES
SoftwareSMILES
CACTVS 3.341[O-][P]([O-])([O-])=O
ACDLabs 10.04[O-]P([O-])([O-])=O
OpenEye OEToolkits 1.5.0[O-]P(=O)([O-])[O-]
FormulaO4 P
NamePHOSPHATE ION
ChEMBL
DrugBankDB14523
ZINC
PDB chain3tm8 Chain A Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3tm8 The structure of an unconventional HD-GYP protein from Bdellovibrio reveals the roles of conserved residues in this class of cyclic-di-GMP phosphodiesterases.
Resolution1.28 Å
Binding residue
(original residue number in PDB)		H150 D184 H187 W209 H212 E238 N265 R269
Binding residue
(residue number reindexed from 1)		H151 D185 H188 W210 H213 E239 N266 R270
Annotation score3
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:3tm8, PDBe:3tm8, PDBj:3tm8
PDBsum3tm8
PubMed21990613
UniProtQ6MM30

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