Structure of PDB 3tb0 Chain A Binding Site BS01

Receptor Information
>3tb0 Chain A (length=161) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VLDGPYQPTTFNPPVDYWMLLAPTAAGVVVEGTNNTDRWLATILVEPNVT
SETRSYTLFGTQEQITIANASQTQWKFIDVVKTTQNGSYSQYGPLQSTPK
LYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCDFYIIPREEE
STCTEYINNGL
Ligand information
Ligand IDMN0
InChIInChI=1S/C12H21NO10/c1-22-12(11(20)21)2-5(16)8(13-7(18)4-15)10(23-12)9(19)6(17)3-14/h5-6,8-10,14-17,19H,2-4H2,1H3,(H,13,18)(H,20,21)/t5-,6+,8+,9+,10+,12+/m0/s1
InChIKeyNFUCYHODBBSMAK-BLMTXZDNSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.2COC1(CC(C(C(O1)C(C(CO)O)O)NC(=O)CO)O)C(=O)O
OpenEye OEToolkits 1.7.2CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)CO)O)C(=O)O
ACDLabs 12.01O=C(O)C1(OC)OC(C(NC(=O)CO)C(O)C1)C(O)C(O)CO
CACTVS 3.370CO[C]1(C[CH](O)[CH](NC(=O)CO)[CH](O1)[CH](O)[CH](O)CO)C(O)=O
CACTVS 3.370CO[C@@]1(C[C@H](O)[C@@H](NC(=O)CO)[C@@H](O1)[C@H](O)[C@H](O)CO)C(O)=O
FormulaC12 H21 N O10
Namemethyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid;
methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulosidonic acid;
methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-D-galacto-non-2-ulosidonic acid;
methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-galacto-non-2-ulosidonic acid
ChEMBL
DrugBank
ZINC
PDB chain3tb0 Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3tb0 Structural Basis of Rotavirus Strain Preference toward N-Acetyl- or N-Glycolylneuraminic Acid-Containing Receptors.
Resolution2.0 Å
Binding residue
(original residue number in PDB)
R101 Y155 K187 Y188 S190
Binding residue
(residue number reindexed from 1)
R38 Y92 K124 Y125 S127
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0019058 viral life cycle
Cellular Component
GO:0019028 viral capsid

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Biological Process

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Cellular Component
External links
PDB RCSB:3tb0, PDBe:3tb0, PDBj:3tb0
PDBsum3tb0
PubMed23035213
UniProtP12473|VP4_ROTRH Outer capsid protein VP4

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