Structure of PDB 3swg Chain A Binding Site BS01

Receptor Information
>3swg Chain A (length=417) Species: 224324 (Aquifex aeolicus VF5) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YRDYFVIRGGKPLTGKVKISGAKNAALPIMFATILTEEPCTITNVPDLLD
VRNTLLLLRELGAELEFLNNTVFINPSINSFITNQEIIRRMRASVLSLGP
LLGRFGRAVVGLPGGCSIGARPIDQHLKFFKEAGADVEVREGYVYVNLKE
KRRVHFKFDLVTVTGTENALLYLASVPEESILENIALEPEVMDLIEVLKK
MGAHVKVEGRSAYVKGSENLKGFTHSVIPDRIEAGTFMVGAVLTDGEILL
ENARINHLRAVVEKLKLIGGEVVEENGNLRVFRKESLRACDIETQVYPGF
PTDMQAQFMALLSVAKGKSRIKENIFEHRFHHAQELNRLGANITVRGNTA
YVEGVERLYGSEVYSTDLRASASLVLAGLVAQGETVVRDVYHLDRGYEKL
EEKLKKLGADIERVSEL
Ligand information
Ligand IDEPZ
InChIInChI=1S/C20H31N3O19P2/c1-7(18(30)31)38-16-12(21-8(2)25)19(40-9(5-24)14(16)28)41-44(35,36)42-43(33,34)37-6-10-13(27)15(29)17(39-10)23-4-3-11(26)22-20(23)32/h3-4,7,9-10,12-17,19,24,27-29H,5-6H2,1-2H3,(H,21,25)(H,30,31)(H,33,34)(H,35,36)(H,22,26,32)/t7-,9-,10-,12-,13-,14-,15-,16-,17-,19-/m1/s1
InChIKeyNQBRVZNDBBMBLJ-MQTLHLSBSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C1C=CN(C(=O)N1)C2OC(C(O)C2O)COP(=O)(OP(=O)(OC3OC(C(O)C(OC(C(=O)O)C)C3NC(=O)C)CO)O)O
CACTVS 3.370C[CH](O[CH]1[CH](O)[CH](CO)O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH]1NC(C)=O)C(O)=O
CACTVS 3.370C[C@@H](O[C@H]1[C@H](O)[C@@H](CO)O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@@H]1NC(C)=O)C(O)=O
OpenEye OEToolkits 1.7.2CC(C(=O)O)OC1C(C(OC(C1O)CO)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C
OpenEye OEToolkits 1.7.2C[C@H](C(=O)O)O[C@@H]1[C@H]([C@H](O[C@@H]([C@H]1O)CO)O[P@](=O)(O)O[P@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)NC(=O)C
FormulaC20 H31 N3 O19 P2
Name(2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoic acid
ChEMBL
DrugBank
ZINCZINC000008551287
PDB chain3swg Chain A Residue 518 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3swg Functional Consequence of Covalent Reaction of Phosphoenolpyruvate with UDP-N-acetylglucosamine 1-Carboxyvinyltransferase (MurA).
Resolution1.81 Å
Binding residue
(original residue number in PDB)
K31 N32 R129 P130 I131 D132 Q133 L168 T170 V171 T172 D311 I333 F334 L376
Binding residue
(residue number reindexed from 1)
K23 N24 R121 P122 I123 D124 Q125 L160 T162 V163 T164 D303 I325 F326 L368
Annotation score3
Enzymatic activity
Catalytic site (original residue number in PDB) K31 N32 C124 R129 D311 R403
Catalytic site (residue number reindexed from 1) K23 N24 C116 R121 D303 R395
Enzyme Commision number 2.5.1.7: UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0008760 UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity
GO:0016740 transferase activity
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
Biological Process
GO:0008360 regulation of cell shape
GO:0009252 peptidoglycan biosynthetic process
GO:0019277 UDP-N-acetylgalactosamine biosynthetic process
GO:0051301 cell division
GO:0071555 cell wall organization
Cellular Component
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:3swg, PDBe:3swg, PDBj:3swg
PDBsum3swg
PubMed22378791
UniProtO67315|MURA_AQUAE UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Gene Name=murA)

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