Structure of PDB 3sis Chain A Binding Site BS01

Receptor Information
>3sis Chain A (length=163) Species: 31578 (Porcine rotavirus (serotype 3 / strain CRW-8)) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GSLLDGPYQPTTFNPPTSYWILLAPTVEGVVIQGTNNIDRWLATILIEPN
VQTTNRIYNLFGQQVTLSVENTSQTQWKFIDVSKTTPTGNYTQHGPLFST
PKLYAVMKFSGRIYTYNGTTPNATTGYYSTTNYDTVNMTSFCDFYIIPRN
QEEKCTEYINHGL
Ligand information
Ligand IDMN0
InChIInChI=1S/C12H21NO10/c1-22-12(11(20)21)2-5(16)8(13-7(18)4-15)10(23-12)9(19)6(17)3-14/h5-6,8-10,14-17,19H,2-4H2,1H3,(H,13,18)(H,20,21)/t5-,6+,8+,9+,10+,12+/m0/s1
InChIKeyNFUCYHODBBSMAK-BLMTXZDNSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.2COC1(CC(C(C(O1)C(C(CO)O)O)NC(=O)CO)O)C(=O)O
OpenEye OEToolkits 1.7.2CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)CO)O)C(=O)O
ACDLabs 12.01O=C(O)C1(OC)OC(C(NC(=O)CO)C(O)C1)C(O)C(O)CO
CACTVS 3.370CO[C]1(C[CH](O)[CH](NC(=O)CO)[CH](O1)[CH](O)[CH](O)CO)C(O)=O
CACTVS 3.370CO[C@@]1(C[C@H](O)[C@@H](NC(=O)CO)[C@@H](O1)[C@H](O)[C@H](O)CO)C(O)=O
FormulaC12 H21 N O10
Namemethyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid;
methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-alpha-D-galacto-non-2-ulosidonic acid;
methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-D-galacto-non-2-ulosidonic acid;
methyl 3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-galacto-non-2-ulosidonic acid
ChEMBL
DrugBank
ZINC
PDB chain3sis Chain A Residue 6535 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3sis Novel structural insights into rotavirus recognition of ganglioside glycan receptors.
Resolution2.2 Å
Binding residue
(original residue number in PDB)
R101 H155 G187 Y188 Y189 S190
Binding residue
(residue number reindexed from 1)
R40 H94 G126 Y127 Y128 S129
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0019058 viral life cycle
Cellular Component
GO:0019028 viral capsid

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Biological Process

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Cellular Component
External links
PDB RCSB:3sis, PDBe:3sis, PDBj:3sis
PDBsum3sis
PubMed21945555
UniProtP0C6Y8|VP4_ROTP3 Outer capsid protein VP4

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