Structure of PDB 3ryb Chain A Binding Site BS01

Receptor Information
>3ryb Chain A (length=563) Species: 416870 (Lactococcus cremoris subsp. cremoris MG1363) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KLKAGNFDVAYQNPDKAIKGGNLKVAYQSDSPMKAQWLSGLSNDATFATM
SGPGGGQDGLFFTDSGFKFIKGGAADVALDKESKTATITLRKDLKWSDGS
EVTAKDYEFTYETIANPAYGSDRWTDSLANIVGLSDYHTGKAKTISGITF
PDGENGKVIKVQFKEMKPGMTQSGNGYFLETVAPYQYLKDVAPKDLASSP
KTTTKPLVTGPFKPENVVAGESIKYVPNPYYWGEKPKLNSITYEVVSTAK
SVAALSSSKYDIINGMVSSQYKQVKNLKGYKVLGQQAMYISLMYYNLGHY
DAKNSINVQDRKTPLQDQNVRQAIGYARNVAEVDNKFSNGLSTPANSLIP
PIFKQFTSSSVKGYEKQDLDKANKLLDEDGWKLNKSTGYREKDGKELSLV
YAARVGDANAETIAQNYIQQWKKIGVKVSLYNGKLMEFNSWVDHMTTPPG
ANDWDITDGSWSLASEPSQQDLFSAAAPYNFGHFNDSEITKDLNDIDSAK
SENPTYRKAAFVKYQEDMNKKAYVIPTNFMLNYTPVNKRVVGMTLDYGAM
NTWSEIGVSSAKL
Ligand information
Receptor-Ligand Complex Structure
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PDB3ryb Importance of a Hydrophobic Pocket for Peptide Binding in Lactococcal OppA.
Resolution1.5 Å
Binding residue
(original residue number in PDB)		S41 N55 D56 A57 T58 R135 G186 E192 Y301 F450 S472 W473 S474 L475 A476 S477 L484 F493
Binding residue
(residue number reindexed from 1)		S29 N43 D44 A45 T46 R123 G174 E180 Y289 F438 S460 W461 S462 L463 A464 S465 L472 F481
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:1904680 peptide transmembrane transporter activity
Biological Process
GO:0015833 peptide transport
Cellular Component
GO:0030288 outer membrane-bounded periplasmic space
GO:0042597 periplasmic space

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3ryb, PDBe:3ryb, PDBj:3ryb
PDBsum3ryb
PubMed21665971
UniProtA2RJ53

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