Structure of PDB 3rf6 Chain A Binding Site BS01

Receptor Information
>3rf6 Chain A (length=340) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KIAFAFAIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERAR
TEFISSKLDVDVSPLQIIQSHTPYKSLVNKYSRILAVGTPSVRGVAEGYG
FQDVVHQTDIVRYNRDIAPFSGLSDEQVMEYSRDIPDLTTKKFDAVLVFN
DPHDWAADIQIISDAINSENGMLNTLRNEKSGKPSIPIYFSNQDLLWANP
YKLNRFGQGAFRLLVRRLYLELNGEPLQDYTLGKPTKLTYDFAHHVLIDW
EKRLSGKIGQSVKQKLPLLGTKPSTSPFHAVFMVGDNPASDIIGAQNYGW
NSCLVKTGVYNEGDDLKECKPTLIVNDVFDAVTKTLEKYA
Ligand information
Ligand IDG3P
InChIInChI=1S/C3H9O6P/c4-1-3(5)2-9-10(6,7)8/h3-5H,1-2H2,(H2,6,7,8)/t3-/m1/s1
InChIKeyAWUCVROLDVIAJX-GSVOUGTGSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C(COP(=O)(O)O)O)O
CACTVS 3.385OC[C@@H](O)CO[P](O)(O)=O
ACDLabs 12.01O=P(OCC(O)CO)(O)O
OpenEye OEToolkits 1.7.6C([C@H](COP(=O)(O)O)O)O
CACTVS 3.385OC[CH](O)CO[P](O)(O)=O
FormulaC3 H9 O6 P
NameSN-GLYCEROL-3-PHOSPHATE
ChEMBLCHEMBL1232920
DrugBankDB02515
ZINCZINC000003830896
PDB chain3rf6 Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3rf6 Crystal structure of glycerol-3 phosphate bound HAD-like phosphatase from Saccharomyces cerevisiae
Resolution1.695 Å
Binding residue
(original residue number in PDB)		I20 D21 T52 N53 D206 K246
Binding residue
(residue number reindexed from 1)		I8 D9 T40 N41 D194 K234
Annotation score4
Enzymatic activity
Enzyme Commision number 3.-.-.-
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0016787 hydrolase activity
Biological Process
GO:0008150 biological_process
GO:0046474 glycerophospholipid biosynthetic process
Cellular Component
GO:0005739 mitochondrion

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3rf6, PDBe:3rf6, PDBj:3rf6
PDBsum3rf6
PubMed
UniProtP36151|YK50_YEAST Mitochondrial hydrolase YKR070W (Gene Name=YKR070W)

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