Structure of PDB 3rdb Chain A Binding Site BS01

Receptor Information
>3rdb Chain A (length=164) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGS
TFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMA
NAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGR
TSKKIVITDCGQLS
Ligand information
Ligand ID5MZ
InChIInChI=1S/C9H8ClN3O/c10-5-8-12-9(13-14-8)6-2-1-3-7(11)4-6/h1-4H,5,11H2
InChIKeyAHCZAZOXRKPNHL-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0c1cc(cc(c1)N)c2nc(on2)CCl
CACTVS 3.370Nc1cccc(c1)c2noc(CCl)n2
ACDLabs 12.01ClCc1nc(no1)c2cc(ccc2)N
FormulaC9 H8 Cl N3 O
Name3-[5-(chloromethyl)-1,2,4-oxadiazol-3-yl]aniline
ChEMBL
DrugBank
ZINCZINC000012649233
PDB chain3rdb Chain A Residue 208 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3rdb Fragment-based discovery of a new family of non-peptidic small-molecule cyclophilin inhibitors with potent antiviral activities.
Resolution1.55 Å
Binding residue
(original residue number in PDB)		T115 R124 N144 T149 Q153
Binding residue
(residue number reindexed from 1)		T72 R81 N101 T106 Q110
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) R97 F102 Q105 N144 F155 L164 H168
Catalytic site (residue number reindexed from 1) R54 F59 Q62 N101 F112 L121 H125
Enzyme Commision number 5.2.1.8: peptidylprolyl isomerase.
Gene Ontology
Molecular Function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity
Biological Process
GO:0000413 protein peptidyl-prolyl isomerization
GO:0006457 protein folding

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Molecular Function
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Biological Process
External links
PDB RCSB:3rdb, PDBe:3rdb, PDBj:3rdb
PDBsum3rdb
PubMed27652979
UniProtP30405|PPIF_HUMAN Peptidyl-prolyl cis-trans isomerase F, mitochondrial (Gene Name=PPIF)

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